View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3503_high_2 (Length: 469)
Name: NF3503_high_2
Description: NF3503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3503_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 28937841 - 28938257
Alignment:
| Q |
11 |
cataggcatcggagaggggcaaggggcaagaggcaagggagcagagtgattcaatgacatacattttgactagtaatttacaatagtaccaccattatta |
110 |
Q |
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| T |
28937841 |
cataggcatcggagaggggcaaggggcaagaggcaagggagcagagtgattcaatgacatacattttgactagtaatttacaatagtaccgccattatta |
28937940 |
T |
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| Q |
111 |
actcgagtcctgacctcatgcacttcaactgacttgtagatatgtggacaagaacattcaacaaaaatacagattcaagcaagacaaacaacacatgtgt |
210 |
Q |
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| T |
28937941 |
actcgagtcctgacctcatgcacttcaactgacttgtagatatgtggacaagaacattcaacaaaaatacagattcaaacaagacaaacaacacatgtgt |
28938040 |
T |
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| Q |
211 |
tctacattattgaacaactcaatcaaacaataaaggaccacaaccttaaacacatgaaataatatgcaagtggaccacagcacaataaagactctcaatc |
310 |
Q |
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| T |
28938041 |
tctacattattgaacaactcaatcaaacaataaaggaccacaaccttaaacacatgaaataatatgcaagtggaccacagcacaataaagactctcaatc |
28938140 |
T |
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| Q |
311 |
tctcaggaaacatgcaggaaagaaggtgggtgcgacaactttacccaaacat-aattatacctagcacaatattttgggtcgtcttgtcgaaaccagtgt |
409 |
Q |
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| T |
28938141 |
tctcaggaaacatgcaggaaagaaggtgggtgcgacaactttacccaaacataaattatacattgcacaatattttgggtcgtcttgtagaaaccagtgt |
28938240 |
T |
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| Q |
410 |
tttccaccacttccatt |
426 |
Q |
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| T |
28938241 |
tttccaccacttccatt |
28938257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 453
Target Start/End: Original strand, 28938256 - 28938315
Alignment:
| Q |
394 |
ttgtcgaaaccagtgttttccaccacttccattcgtgctcgtgtccgccattgttgaaac |
453 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28938256 |
ttgtggaaaccagtgttttccaccacttccattcgtgctcgtgtttgccattgttgaaac |
28938315 |
T |
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