View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3503_high_3 (Length: 432)
Name: NF3503_high_3
Description: NF3503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3503_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Complemental strand, 49166123 - 49165720
Alignment:
| Q |
13 |
aatatgaacatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaacct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49166123 |
aatatgaacatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaacct |
49166024 |
T |
|
| Q |
113 |
tcacccaactttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgtaacattgcagtcttctttttgggaccca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49166023 |
tcacccaactttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgtaacattgcagtcttctttttgggaccca |
49165924 |
T |
|
| Q |
213 |
agtacttgctcgagaatgaatttcgtacacgctgcgcaaattagtgtttcttttacagttagtgaggatatgtcaataactgcatactttctactagaat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49165923 |
agtacttgctcgagaatgaatttcgtacacgctgcgcaaattagtgtttcttttacagttagtgagggtatgtcaataactgcatactttctactagaat |
49165824 |
T |
|
| Q |
313 |
tcatgacatgaaataaatactactccggttttaagcataatcattagatatatgtatttggttcaaatatcataaatacatattccttactggtctgtaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49165823 |
tcatgacatgaaataaatactactccggttttaagcataatcattagatatatgtatttggttcaaatatcataaatacatattccttactggtctgtaa |
49165724 |
T |
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| Q |
413 |
acat |
416 |
Q |
| |
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|||| |
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| T |
49165723 |
acat |
49165720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 12875737 - 12875657
Alignment:
| Q |
13 |
aatatgaacatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttc |
93 |
Q |
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||||||||||| |||||||||||||||| | ||| ||| |||| |||||| |||||||| | | ||||||||||||||| |
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| T |
12875737 |
aatatgaacattaagcacaacatcttccctcttgatgagctcaaagacacatgcatctccacctttcaatttattttcttc |
12875657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 43752551 - 43752422
Alignment:
| Q |
13 |
aatatgaacatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaacct |
112 |
Q |
| |
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||||||| |||||| ||||| ||||||||| ||| | ||| |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |
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| T |
43752551 |
aatatgagcatcaaacacaagatcttccttattgacgagctcaaaaacacatacatctccagcctccaatttattttcctctacaaacttactccaacct |
43752452 |
T |
|
| Q |
113 |
tcacccaactttgttgctggttcggatgga |
142 |
Q |
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|| |||||| |||| |||||||||||| |
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| T |
43752451 |
gtactcaacttggttgacggttcggatgga |
43752422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 380
Target Start/End: Complemental strand, 43752305 - 43752205
Alignment:
| Q |
281 |
tatgtcaataactgcatactttctactagaattcatgacatgaaataaatactactccggttttaagcataatcattagatatat-gtatttggttcaaa |
379 |
Q |
| |
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||||||||||||||||| ||| || | ||| | ||||||||||| ||||||||||||| |||| || ||||| ||| ||||| || |||||||||||||| |
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| T |
43752305 |
tatgtcaataactgcatgcttgctccaagattgcatgacatgaattaaatactactccagtttcaaacataaccatgagataaatagtatttggttcaaa |
43752206 |
T |
|
| Q |
380 |
t |
380 |
Q |
| |
|
| |
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|
| T |
43752205 |
t |
43752205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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