View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3503_high_5 (Length: 365)
Name: NF3503_high_5
Description: NF3503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3503_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 6994065 - 6993881
Alignment:
| Q |
13 |
cacactcttcctctaattaatgcactacctcaatcccaccaattcccttcatacacatttaatgttttgtcacaaaattttcacttcaattccaaaacaa |
112 |
Q |
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| T |
6994065 |
cacactcttcctctaattaatgcactacctcaatcccaccaattcccttcatacacatttaatgttttgtcacaaaattttcacttcaattccaaaacaa |
6993966 |
T |
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| Q |
113 |
cactc-nnnnnnngtcacaaccatattttatccattccatccttaaaccttgatggttgtgttttatgaagacaactactcatat |
196 |
Q |
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| T |
6993965 |
cactcttttttttgtcacaaccatattttatccattccatccttaaaccttgatggttgtgttttatgaagacaactactcatat |
6993881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 236 - 343
Target Start/End: Complemental strand, 6993849 - 6993742
Alignment:
| Q |
236 |
gacattcttgtagtttacaacgttaatggctccttcttatagaccgagtcagagtgaagtttaacaacttgtcataattaaaggtacgttttttatatta |
335 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993849 |
gacattcttgtagtttacaacgttaatggttccttcttatagaccgagtcagagtgaagtttaacaacttgtcataattaaaggtacgttttttatatta |
6993750 |
T |
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| Q |
336 |
aaccaatt |
343 |
Q |
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| T |
6993749 |
aaacaatt |
6993742 |
T |
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