View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3503_low_10 (Length: 266)
Name: NF3503_low_10
Description: NF3503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3503_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 63 - 259
Target Start/End: Original strand, 4064658 - 4064845
Alignment:
| Q |
63 |
acaaaatatacttgttggtaaccctaggtatagttctgttatactttcagtatgcctcgagtacaaaatagaactcatgttttgtcctgttctaacttgt |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4064658 |
acaaaatatacttgttggtaaccctaggtatagttctgttatactttaagtatgcctcgagtataaaatagaactcatgttttgtcctgttctaacttgt |
4064757 |
T |
|
| Q |
163 |
ctatcaaacaccatcatagggtcgcttattggtatacacaatataattacttgtaccccaagatattgggactaacaagagtcaagagttacctttg |
259 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4064758 |
ctatca---------atagggtcgcttattggtatacacaatataattacttgtaccccaagatattgggactaacaagagtcaagagttacctttg |
4064845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 4064570 - 4064616
Alignment:
| Q |
19 |
ggtcaggcatggttataaaggggaggatgctttaggcactcgagaca |
65 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
4064570 |
ggtcaggcatggttatcaaggggaggatactttaggcactcgagaca |
4064616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University