View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3503_low_18 (Length: 229)
Name: NF3503_low_18
Description: NF3503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3503_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 44291409 - 44291608
Alignment:
| Q |
14 |
cagagattcaagatgacttgattgtaattcctacgtactaatcaatctgcttattaactaaacttggaaaatctcaattttatagggattaaaaatatat |
113 |
Q |
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| T |
44291409 |
cagagattcaagatgacttgattgtaattcctacgtactaatcaatctgcttattaactaaacttggaaaatctcaattttatagggattaaaaatatat |
44291508 |
T |
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| Q |
114 |
tttagtcctttttgtgcatatccaacattaagaagcttattatttgttctaggttgtggttgcatccgcaaataatgtgacagaagtacaaccacatttt |
213 |
Q |
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| T |
44291509 |
tttagtcctttttgtgcatatccaacattaagaagcttattatttgttctaggttgtggttgcatccgcaaagaatgtgacagaagtacaaccacatttt |
44291608 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 32164609 - 32164546
Alignment:
| Q |
146 |
aagcttattatttgttctaggttgtggttgcatccgcaaataatgtgacagaagtacaaccaca |
209 |
Q |
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| T |
32164609 |
aagcttattatttcttctaggttgtggtcgcatctggaaaaaatgtcacagaaatacagccaca |
32164546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 17842395 - 17842350
Alignment:
| Q |
70 |
actaaacttggaaaatctcaattttatagggattaaaaatatattt |
115 |
Q |
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| T |
17842395 |
actaaactttgaaggtctcaattttatagggactaaaaatatattt |
17842350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 44080890 - 44080845
Alignment:
| Q |
70 |
actaaacttggaaaatctcaattttatagggattaaaaatatattt |
115 |
Q |
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| T |
44080890 |
actaaacttagaaggtctcaattttatagggattaaaaacatattt |
44080845 |
T |
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