View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3503_low_9 (Length: 315)
Name: NF3503_low_9
Description: NF3503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3503_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 55374593 - 55374291
Alignment:
| Q |
1 |
ttctattgtaaacactaattaacttcctatgtccattgaatcatcatcattttattctaataacacaacactttnnnnnnnnnnn---tggaagtataac |
97 |
Q |
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| T |
55374593 |
ttctattgtaaacactaattaacttcctatgtccattgaatcatcatcattttattctaataacacaccactttaaaaaaaaataaaatggaagtataac |
55374494 |
T |
|
| Q |
98 |
ttttgtatcaaagtttaagaaattgtatagtaagtcaactaaccaagctcgtgcaaccacgtttaatgttaactaaactcaaaaaatgtttaagtcaagc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55374493 |
ttttgtatcaaagtttaagaaattgtatagtaagtcaactaaccaagctcgtgcaaccacgtttaatgttaactaaactcaaaaaatgtttaagtcaagc |
55374394 |
T |
|
| Q |
198 |
tcctaaaatgtatgcacaaccttctcctcacctattaaatgagcacattgttccctttgtaattacttcaacctcaacacaatcacttaatcatggccat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55374393 |
tcctaaaatgtatgcacaaccttctcctcacctattaaatgagcacattgttccctttgtaattacttcaacctcaacacaatcacttaatcatggccat |
55374294 |
T |
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| Q |
298 |
ttc |
300 |
Q |
| |
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||| |
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| T |
55374293 |
ttc |
55374291 |
T |
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