View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3505_high_10 (Length: 251)
Name: NF3505_high_10
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3505_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 44798513 - 44798728
Alignment:
| Q |
14 |
agacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgtttaattccatttccatgatttctcaaaatccctaagcccca |
113 |
Q |
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| T |
44798513 |
agacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgttcaattccatttccatgatttctcaaaatccctaagcccca |
44798612 |
T |
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| Q |
114 |
attcaaaaaggttacaaaccctaagccccaattcacagaacaagcaagaaaattattatgaatggaaaacgagtgaatgaaaataaatacatttggtgaa |
213 |
Q |
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| T |
44798613 |
attcaaaaaggttacaaaccctaagccccaattcacagaacaagcaagaaaattattatgaatggaaaacgagtgaatgaaaataaatacctttggtgaa |
44798712 |
T |
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| Q |
214 |
gaaagaacgcgggagc |
229 |
Q |
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| T |
44798713 |
gaaagaacgcgggagc |
44798728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 35161590 - 35161539
Alignment:
| Q |
14 |
agacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgag |
65 |
Q |
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| T |
35161590 |
agacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgag |
35161539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 39839898 - 39839831
Alignment:
| Q |
18 |
gaagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgtttaattccatttc |
85 |
Q |
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| T |
39839898 |
gaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatttc |
39839831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 39844804 - 39844740
Alignment:
| Q |
19 |
aagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgtttaattccatt |
83 |
Q |
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| T |
39844804 |
aagacgaagacgaaggatgatgttgcattttttgaagtgcgaccgagggtttgttcaattccatt |
39844740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 35161536 - 35161475
Alignment:
| Q |
145 |
ttcacagaacaagcaagaaaattattat---gaatggaaaacgagtgaatgaaaataaatac |
203 |
Q |
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| T |
35161536 |
ttcacagaacaggcaagaaaattattattatgaatggaaaaacagtgtatgaaaataaatac |
35161475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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