View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3505_high_11 (Length: 246)

Name: NF3505_high_11
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3505_high_11
NF3505_high_11
[»] chr3 (7 HSPs)
chr3 (117-206)||(28147091-28147180)
chr3 (145-206)||(28182880-28182941)
chr3 (135-206)||(28521252-28521323)
chr3 (159-206)||(28052307-28052354)
chr3 (117-174)||(28131575-28131632)
chr3 (117-169)||(28052450-28052502)
chr3 (117-169)||(28062875-28062927)
[»] scaffold0257 (1 HSPs)
scaffold0257 (154-206)||(16808-16860)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 28147180 - 28147091
Alignment:
Q  117 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttatttaattttcaacactccaacccttttgtttttcaatctg 206  Q
    |||||||| |||| |||| | | || |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28147180 aatgtaacaaaaagaaagcactacagtatttaattaaattaatattgttatttaattttcaacactccaacctttttgtttttcaatctg 28147091  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 28182941 - 28182880
Alignment:
Q  145 tttaatttgattaatattgttatttaattttcaacactccaacccttttgtttttcaatctg 206  Q
    |||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28182941 tttaattaaattaatattgttatttaattttcaacaccccaacccttttgtttttcaatctg 28182880  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 28521252 - 28521323
Alignment:
Q  135 tattgcattatttaatttgattaatattgttatttaattttcaacactccaacccttttgtttttcaatctg 206  Q
    |||| ||||||||||||  ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  28521252 tattacattatttaattaaattaatattgtcatttacttttcaacactccaacacttttgtttttcaatctg 28521323  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 28052354 - 28052307
Alignment:
Q  159 tattgttatttaattttcaacactccaacccttttgtttttcaatctg 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  28052354 tattgttatttaattttcgacactccaacccttttgtttttcaatctg 28052307  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 28131632 - 28131575
Alignment:
Q  117 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttatttaattt 174  Q
    ||||||||||||| |||||| | ||||||||||||  ||||| |||| ||||||||||    
T  28131632 aatgtaaccaaaagaaagtactacattatttaattaaattaacattgatatttaattt 28131575  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 28052502 - 28052450
Alignment:
Q  117 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttattt 169  Q
    |||| |||||||| |||||| | ||||||||||||  ||||||||||||||||    
T  28052502 aatgcaaccaaaagaaagtagtacattatttaattaaattaatattgttattt 28052450  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 28062927 - 28062875
Alignment:
Q  117 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttattt 169  Q
    |||| |||||||| |||||| | ||||||||||||  ||||||||||||||||    
T  28062927 aatgcaaccaaaagaaagtagtacattatttaattaaattaatattgttattt 28062875  T

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Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 16860 - 16808
Alignment:
Q  154 attaatattgttatttaattttcaacactccaacccttttgtttttcaatctg 206  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  16860 attaatattgttatttaattttgaacactccaacccttctgtgtttcaatctg 16808  T

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