View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3505_high_12 (Length: 205)

Name: NF3505_high_12
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3505_high_12
NF3505_high_12
[»] chr1 (13 HSPs)
chr1 (1-189)||(38137583-38137771)
chr1 (1-189)||(3301104-3301292)
chr1 (1-179)||(7890777-7890955)
chr1 (1-189)||(43045368-43045556)
chr1 (1-189)||(43045821-43046009)
chr1 (1-189)||(43066398-43066586)
chr1 (1-189)||(45983435-45983623)
chr1 (1-189)||(51291990-51292177)
chr1 (1-179)||(43084249-43084427)
chr1 (1-186)||(45993218-45993403)
chr1 (1-186)||(7888505-7888690)
chr1 (1-189)||(40034423-40034609)
chr1 (1-143)||(43076558-43076699)
[»] chr8 (4 HSPs)
chr8 (1-186)||(1846766-1846951)
chr8 (1-189)||(4620064-4620252)
chr8 (1-189)||(4297847-4298035)
chr8 (1-189)||(4787233-4787421)
[»] chr4 (1 HSPs)
chr4 (1-189)||(4231841-4232029)
[»] chr2 (3 HSPs)
chr2 (1-181)||(34691201-34691379)
chr2 (1-181)||(34713613-34713791)
chr2 (5-181)||(16232552-16232728)
[»] chr5 (1 HSPs)
chr5 (1-181)||(16349513-16349693)
[»] chr6 (2 HSPs)
chr6 (1-186)||(7519445-7519630)
chr6 (1-186)||(7528816-7529001)
[»] chr7 (1 HSPs)
chr7 (30-92)||(39242152-39242214)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 5e-98; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 38137771 - 38137583
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38137771 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 38137672  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38137671 tcacgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 38137583  T

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Target: chr1; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 3301104 - 3301292
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||| ||||||||| ||||||||||||    
T  3301104 gttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaacttccacagagcaatgtcaattgtgatacctctt 3301203  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||    || ||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||| ||||||||||||||  ||||||||    
T  3301204 tcacattcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaat 3301292  T

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Target: chr1; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 7890955 - 7890777
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  | | ||||| |||||||||||  |||||||||||||||| ||||||||||||    
T  7890955 gttcttaatgaaatccctgtgtccaggggcatcaatgagagtgcagcggaagttggttgtctcaaacttccacagagaaatgtcaattgtgatacctctt 7890856  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaa 179  Q
    ||  ||||||||||||||||||| |||||||||||||||||||| ||  || |||| ||||||| ||||||||||||||    
T  7890855 tcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaatgcctgttcatctcagcagcttctttctcaa 7890777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 43045368 - 43045556
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||  | |||| ||||||||| ||||||||||||    
T  43045368 gttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctt 43045467  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||  | || |||||||||||||| || ||||| ||||||||||| ||  ||||||| ||||||| ||||||||||||||  ||||||||    
T  43045468 tcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaat 43045556  T

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Target: chr1; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 43045821 - 43046009
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||  | |||| ||||||||| ||||||||||||    
T  43045821 gttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctt 43045920  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||  | || |||||||||||||| || ||||| ||||||||||| ||  ||||||| ||||||| ||||||||||||||  ||||||||    
T  43045921 tcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaat 43046009  T

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Target: chr1; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 43066586 - 43066398
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||  | |||| ||||||||| ||||||||||||    
T  43066586 gttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctt 43066487  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||  | || |||||||||||||| || ||||| ||||||||||| ||  ||||||| ||||||| ||||||||||||||  ||||||||    
T  43066486 tcacgttcagccttgagcttgtcaagaacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaat 43066398  T

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Target: chr1; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 45983623 - 45983435
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||| ||||| | ||||||||| || | |||||||    
T  45983623 gttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagttgtacttgtttgtctcaaacttcgacagggtaatgtcaattgtaacacctctt 45983524  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||  | || |||||||||||||| |||||||||||||||||||| ||  ||||||| |||| || ||||||||||||||| ||||||||    
T  45983523 tcacgttcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcttgttcatcttagcagcttctttctcaagactctcaat 45983435  T

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Target: chr1; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 51291990 - 51292177
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||||||||||| ||  |||||||||||||||||||||||||| ||||||||| | || |||||||| || |||||||||||||| ||||||||||||    
T  51291990 gttcttaatgaaattcccatgtccgggggcatcaatgagagtgcaatagtacttgattgt-tcaaacttggatagagaaatgtcaattgtgatacctctt 51292088  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||  |||| ||||||| |||||| ||||||||||||||| |||| ||  || |||| ||||||||||||||||||||||||||||||||    
T  51292089 tcacgctcagccttgaacttgtcaagcacccaagcatacgtgaatgaacgcatgttcatctcagtagcttctttctcaagtctctcaat 51292177  T

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Target: chr1; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 43084249 - 43084427
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||  | |||| ||||||||| ||||||||||||    
T  43084249 gttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctt 43084348  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaa 179  Q
    ||  | || |||||||||||||| || ||||| ||||||||||| ||  ||||||| ||||||| ||||||||||||||    
T  43084349 tcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaa 43084427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 45993403 - 45993218
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||  ||||||| | ||||||||||| |||| |||| ||||||| ||||||||||||    
T  45993403 gttcttaatgaaatccctgtgtccggaggcatcaatgacagtgcagctgtacttgtttgtctcaaacttcgacaaagaactgtcaattgtgatacctctt 45993304  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctc 186  Q
    ||  |||| | |||||||||||| |||||||||||||||||||| ||  ||||| | ||||||| ||||||||||||||| |||||    
T  45993303 tcacgctcagtcttgagcttgtcaagcacccaagcatacttgaatgaacgcttgatcatctcagcagcttctttctcaagactctc 45993218  T

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Target: chr1; HSP #11
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 7888690 - 7888505
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||| |||| ||||||  | |||||||||||||| ||||||||||||    
T  7888690 gttcttgatgaaatccctgtgtccgggggcatcaatgagagtgcagcagtagctggttgtctgaaacttccaaagagaaatgtcaattgtgatacctctt 7888591  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctc 186  Q
    ||  |||| |||||||| ||||| ||||||||||||||||||||  |  |  |||||||||||| |||||||||||||||| ||||    
T  7888590 tcacgctcagccttgagtttgtcaagcacccaagcatacttgaataaacgtctgtttatctcagcagcttctttctcaagtttctc 7888505  T

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Target: chr1; HSP #12
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 40034609 - 40034423
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||| ||||||||  ||||||||||||| |||||||||||||||| ||| ||||| ||||||||||| ||||  ||||| ||||| || | |||||||    
T  40034609 gttcttgatgaaatc--tgtgtccgggggcgtcaatgagagtgcagtggtatttggttgtctcaaacttggacatggaaatatcaattgtaacacctctt 40034512  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||  |||| |||||||||||||| || ||||||||||||||||| ||  ||||||| ||||||| |||||||||||||| | |||||||    
T  40034511 tcacgctcagccttgagcttgtcaagtacccaagcatacttgaatgagcgcttgttcatctcagcagcttctttctcaaatttctcaat 40034423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 43076699 - 43076558
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||||||||||| | ||||||| ||| ||||||||| |  |||| ||| ||| || |||||||||||  | |||||||| ||||| || |||||||||    
T  43076699 gttcttaatgaaattcttgtgtcccgggacatcaatgacaacgcagcagttctttgttgtctcaaacttccagagagaaatctcaatggt-atacctctt 43076601  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttga 143  Q
    ||  | || ||| |||||||||| || | ||| ||||||||||    
T  43076600 tcacgttcagccctgagcttgtcaaggatccaggcatacttga 43076558  T

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Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 1846766 - 1846951
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | | ||||| |||||||||||  | |||||||||||||| ||||||||||||    
T  1846766 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggttgtctcaaacttccatagagaaatgtcaattgtgatacctctt 1846865  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctc 186  Q
    ||  ||||||||||||||||||| |||||||||||||||||||| ||  || |||||||||||| |||||||||||||| ||||||    
T  1846866 tcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaacgcctgtttatctcagcagcttctttctcaaatctctc 1846951  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 4620064 - 4620252
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||    
T  4620064 gttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttgtctcaaacttggacagagaaatgtcgattgtgatacctctt 4620163  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||  |||| |||||||||||||| |||||||||||||| ||||| ||   | ||||||||||||  ||||||||||||| || ||||||    
T  4620164 tcacgctcagccttgagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaat 4620252  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 4297847 - 4298035
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||||||| | ||||| ||||||||||||||||||| | |||||| ||||||| | ||||||||||| ||||||||||||||||| |||  |||||||    
T  4297847 gttcttaatgcattccctatgtccgggggcatcaatgacaatgcagttgtacttgtttgtctcaaacttggacagagaaatgtcaattgtggcacctctt 4297946  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    || || || || ||||| ||||| || |||||||||||||||||||| ||| |||| | ||||  | || |||||||||||||||||||    
T  4297947 tcatggtcagctttgagtttgtcaagtacccaagcatacttgaacgaaggcatgttaacctcaacatctactttctcaagtctctcaat 4298035  T

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Target: chr8; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 4787421 - 4787233
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||| ||||| | |||||||||||||| |||||||||| |||||||| ||||||| | ||||||||||| |||| |||||||||||| |||  |||||||    
T  4787421 gttcctaatgtattccctgtgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaacttggacatagaaatgtcaattgtggcacctctt 4787322  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||  ||||  ||||||| ||||| |||||||||||||||||||| || |||  |||   ||||  ||||||||||||||||||||||||    
T  4787321 tcacgctcacccttgagtttgtcaagcacccaagcatacttgaatgaaggccagttagcctcataagcttctttctcaagtctctcaat 4787233  T

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Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 4231841 - 4232029
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||  |||||| ||||||||| ||||||||||||    
T  4231841 gttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaacttccacagagcaatgtcaattgtgatacctctt 4231940  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaat 189  Q
    ||  |||| |||||||||||||| || |||||||||||||| || ||  ||||||| ||||||| ||||||||||||||  ||||||||    
T  4231941 tcacgctcagccttgagcttgtcaagaacccaagcatacttaaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaat 4232029  T

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Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 34691201 - 34691379
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| |||||||||||   || |||||||||||| ||||||||||||    
T  34691201 gttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaacttg--catagaaatgtcaattgtgatacctctt 34691298  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagt 181  Q
    ||  |||| || ||||||||||| |||||||||||||||||||| ||  |||| || ||||||| |||||||||| |||||    
T  34691299 tcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagt 34691379  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 34713613 - 34713791
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| |||||||||||   || |||||||||||| ||||||||||||    
T  34713613 gttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaacttg--catagaaatgtcaattgtgatacctctt 34713710  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagt 181  Q
    ||  |||| || ||||||||||| |||||||||||||||||||| ||  |||| || ||||||| |||||||||| |||||    
T  34713711 tcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagt 34713791  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 16232552 - 16232728
Alignment:
Q  5 ttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcct 104  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||  |||  ||||||||||| ||||||||||||||      
T  16232552 ttaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcac 16232651  T
Q  105 gctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagt 181  Q
    |||| |||||||||||||| |||||||||||||||||||| ||  || | || ||||||| |||||||||| |||||    
T  16232652 gctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcatcttcatctcagcagcttctttcccaagt 16232728  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 16349513 - 16349693
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||| |||||||| ||  ||| |||| ||||||| ||||||||||||    
T  16349513 gttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggttgtctcaaaattcaacatagaattgtcaattgtgatacctctt 16349612  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagt 181  Q
    ||  |||| |||||||| ||||| || ||||| ||||||||||| ||   |||||||| ||||| |||||  |||||||||    
T  16349613 tcgcgctcagccttgagtttgtcaagaacccacgcatacttgaaagaatccttgtttaactcagcagctttattctcaagt 16349693  T

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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 7519630 - 7519445
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||| |||||||| |  |||||||| ||||||||||  ||||||||||||||||| |||||||| ||  ||| || ||| ||||| || || ||||||    
T  7519630 gttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaaagcaatatcaatggtaattcctctt 7519531  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctc 186  Q
    ||  |||| ||||| |||||||| || ||||| || |||||||| ||   |||||| ||||||| |||||| ||||| | ||||||    
T  7519530 tcacgctcagccttaagcttgtcaagaacccatgcgtacttgaaagacctcttgttcatctcagcagcttccttctcgaatctctc 7519445  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 7529001 - 7528816
Alignment:
Q  1 gttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctt 100  Q
    |||||| |||||||| |  |||||||| ||||||||||  ||||||||||||||||| |||||||| ||  |||  | ||| || || || || ||||||    
T  7529001 gttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaaggcaatatcgatggtaattcctctt 7528902  T
Q  101 tcctgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctc 186  Q
    ||  |||| ||||| || ||||| || ||||| ||||||||||| ||  ||||||| ||||||| |||||| ||||||| ||||||    
T  7528901 tcacgctcagccttaagtttgtcaagaacccatgcatacttgaatgaacgcttgttcatctcagcagcttccttctcaaatctctc 7528816  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 39242214 - 39242152
Alignment:
Q  30 catcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtga 92  Q
    ||||||||| ||||||||||||||| || ||||||||||| ||||||| ||||||||| ||||    
T  39242214 catcaatgacagtgcagtagtactttgttgtctcaaacttggacagagcaatgtcaattgtga 39242152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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