View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3505_high_4 (Length: 354)
Name: NF3505_high_4
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3505_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 48510466 - 48510706
Alignment:
| Q |
13 |
agagatgaaggaattagagtggtaaaagaatattgaaagatgatagaatgaggaactattaaagaagaatagtgagagatttggaaggagattgaaatgg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
48510466 |
agagatgaaggaattagagtggtaaaagaatattgaaagatgatagaatgaggaactattaaagaagaataatgaaagatttggaaggagattgaaatgg |
48510565 |
T |
|
| Q |
113 |
aagcaaccatagaagactctggagaaatggaagtgaggctgtgagagccacgtgacttttttaacaagaaaggcacacttattggannnnnnnaattgca |
212 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
48510566 |
aagcaaccatagaagactatggagaaatggaagtgaggctgtgagagccgcgtgacttttttaacaagaaaggcacacttatttgatttttttaattgca |
48510665 |
T |
|
| Q |
213 |
ttttcttatgctcatgttctattaaaaatcactcgattgat |
253 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||| |
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| T |
48510666 |
tttttttatgctcatgttctattaaaaatcacccgattgat |
48510706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 48510790 - 48510820
Alignment:
| Q |
324 |
tgaatttttgaagcaataaaatcaatttata |
354 |
Q |
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| T |
48510790 |
tgaatttttgaagcaataaaatcaatttata |
48510820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 49519288 - 49519524
Alignment:
| Q |
13 |
agagatgaaggaattagagtggtaaaagaatattgaaagatgatagaatgaggaactattaaagaagaatagtgagagatttggaaggagattgaaatgg |
112 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| |
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| T |
49519288 |
agagatgagggaattagagtggtaaaagaatattgaaagatgatagaatgaggaactgttaaaga---atagtgaaagatttggaaggagattgaaatgg |
49519384 |
T |
|
| Q |
113 |
aagcaaccatagaagactctggagaaatggaagtgaggctgtgagagccacgtgacttttttaacaagaaaggcacacttattggannnnnnnaattgca |
212 |
Q |
| |
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|||||||| |||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
49519385 |
aagcaaccgtagaaggctatggagaaatggaagtgaagttgtgagagccacgtgacttttttaacaagagaggcacacttattggatttttttaattgca |
49519484 |
T |
|
| Q |
213 |
ttttcttatgctcatgttctattaaaaatcactcgattga |
252 |
Q |
| |
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|||| | ||||| |||||||||||||||||||| |||||| |
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| T |
49519485 |
ttttttcatgcttatgttctattaaaaatcacttgattga |
49519524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 42945461 - 42945275
Alignment:
| Q |
13 |
agagatgaaggaattagagtggtaaaagaatattgaaagatgatagaatgaggaactattaaagaagaatagtgagagatttggaaggagattgaaatgg |
112 |
Q |
| |
|
|||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
42945461 |
agagatgaggaaattagagtggtaaaagagtattgaaagatgacagaatgaggaactattaatgaagaatagtgaaagatttggaaggagattgaaatgg |
42945362 |
T |
|
| Q |
113 |
aagcaaccatag-aagactctggagaaatggaagtgaggctgtgagagccacgtgacttttttaacaagaaaggcacacttattgga |
198 |
Q |
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||||| || ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
42945361 |
cagcaatggaagcaaggctctcgagaaatggaagtgaggctctgagagccacgtgacttttttaacaagagaggcacatttattgga |
42945275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 43772724 - 43772622
Alignment:
| Q |
58 |
gaatgaggaactattaaa-gaagaatagtgagagatttggaaggagattgaaatggaag---------caaccatagaagactctggagaaatggaagtg |
147 |
Q |
| |
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|||||||||||| ||||| ||| |||||||| |||||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
43772724 |
gaatgaggaactgttaaaagaaaaatagtgaaagatttagaatgagattgaaatggaagtaatggaatcaaccatagaaggctctggagaaatggaagtg |
43772625 |
T |
|
| Q |
148 |
agg |
150 |
Q |
| |
|
||| |
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|
| T |
43772624 |
agg |
43772622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 48459290 - 48459475
Alignment:
| Q |
13 |
agagatgaaggaattagagtggtaaaagaatattgaaagatgatagaatgaggaactattaaagaagaatagtgagagatttggaaggagattgaaatgg |
112 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
48459290 |
agagatgagggaattagagtggtaaaagaatattgaaagatgatagaatcaggaactgttaaagaagaatagtgaaagatttagaaggagattgaaatgg |
48459389 |
T |
|
| Q |
113 |
aagcaaccatagaagactctggagaaatggaagtgaggctgtgagagccacgtgacttttttaacaagaaaggcacacttattgga |
198 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
48459390 |
aagcaaccatagaagactttggagaaatggaagtgaagctctgagagccacgtgactattttaacaagagaggcacacttattgga |
48459475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 42739961 - 42740147
Alignment:
| Q |
13 |
agagatgaaggaattagagtggtaaaagaatattgaaagatgatagaatgaggaactattaaagaagaatagtgagagatttggaaggagattgaaatgg |
112 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
42739961 |
agagatgagggaattatagtggtaaaagaatattgaaagatgatagaatgaggaactattaaagaagaatagtgaaagatttggaaggagattaaaatgg |
42740060 |
T |
|
| Q |
113 |
aagcaa-ccatagaagactctggagaaatggaagtgaggctgtgagagccacgtgacttttttaacaagaaaggcacacttattgga |
198 |
Q |
| |
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||||| | | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42740061 |
cagcaatggaaacaaggctctcgagaaatggaagtgaggctgtgagagccacgtgacttttttaacaagagaggcacacttattgga |
42740147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 48459494 - 48459540
Alignment:
| Q |
206 |
aattgcattttcttatgctcatgttctattaaaaatcactcgattga |
252 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
48459494 |
aattgcatttttttatgcttatgttctattaaaaatcacttgattga |
48459540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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