View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3505_high_5 (Length: 337)
Name: NF3505_high_5
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3505_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 22526021 - 22525752
Alignment:
| Q |
11 |
cacagagcaacggggtcaaagcaactagagagaatattttagtagttgtacaatgatagagtgttttagggtcacacttatttattcacaaatttgcaat |
110 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22526021 |
cacaaagcaacggggtcaaagcaaccagagagaatattttagtagttgtacaatgatagagtgttttagggtcacacttatttattcacaaatttgcaat |
22525922 |
T |
|
| Q |
111 |
aatgcaaaagt---aacacttaactccccaagttaactacaaccgtaatatttaacctctcaactcaaat------taacaatagtatataacataaccc |
201 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
22525921 |
aatgcaaaagtaacaacacttaactccccaagttaactacaaccgtaatatttaacctctcaactcaaattagttataacaacagtatataacataaccc |
22525822 |
T |
|
| Q |
202 |
cttagcttaagcaagctgcagcatagtcttaataattttaannnnnnnggcaaaacactcgtaataattt |
271 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
22525821 |
cttagcttaagcaagctgcaacatactcttaataatttttatttttttggcaaaacactcgtaataattt |
22525752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 323
Target Start/End: Complemental strand, 22525730 - 22525695
Alignment:
| Q |
288 |
aatatataataatatcatttttgcaagaataataat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
22525730 |
aatatataataatatcatttttgcaagaataataat |
22525695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University