View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3505_low_12 (Length: 251)

Name: NF3505_low_12
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3505_low_12
NF3505_low_12
[»] chr2 (5 HSPs)
chr2 (14-229)||(44798513-44798728)
chr2 (14-65)||(35161539-35161590)
chr2 (18-85)||(39839831-39839898)
chr2 (19-83)||(39844740-39844804)
chr2 (145-203)||(35161475-35161536)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 44798513 - 44798728
Alignment:
Q  14 agacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgtttaattccatttccatgatttctcaaaatccctaagcccca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44798513 agacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgttcaattccatttccatgatttctcaaaatccctaagcccca 44798612  T
Q  114 attcaaaaaggttacaaaccctaagccccaattcacagaacaagcaagaaaattattatgaatggaaaacgagtgaatgaaaataaatacatttggtgaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44798613 attcaaaaaggttacaaaccctaagccccaattcacagaacaagcaagaaaattattatgaatggaaaacgagtgaatgaaaataaatacctttggtgaa 44798712  T
Q  214 gaaagaacgcgggagc 229  Q
    ||||||||||||||||    
T  44798713 gaaagaacgcgggagc 44798728  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 35161590 - 35161539
Alignment:
Q  14 agacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgag 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35161590 agacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgag 35161539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 39839898 - 39839831
Alignment:
Q  18 gaagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgtttaattccatttc 85  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||||    
T  39839898 gaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatttc 39839831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 39844804 - 39844740
Alignment:
Q  19 aagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgtttaattccatt 83  Q
    |||||||||||||||||||||||| |||||||||||||  | | ||| ||||||| |||||||||    
T  39844804 aagacgaagacgaaggatgatgttgcattttttgaagtgcgaccgagggtttgttcaattccatt 39844740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 35161536 - 35161475
Alignment:
Q  145 ttcacagaacaagcaagaaaattattat---gaatggaaaacgagtgaatgaaaataaatac 203  Q
    ||||||||||| ||||||||||||||||   ||||||||||  |||| ||||||||||||||    
T  35161536 ttcacagaacaggcaagaaaattattattatgaatggaaaaacagtgtatgaaaataaatac 35161475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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