View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3505_low_3 (Length: 562)
Name: NF3505_low_3
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3505_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 330 - 545
Target Start/End: Complemental strand, 5465531 - 5465319
Alignment:
| Q |
330 |
gttaggggcaggcaggcctctttttatgggaggaatgaagttaacagttgaccacgaatattatgtccacgtgatcacgcattcggaacatcgatgactt |
429 |
Q |
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| T |
5465531 |
gttaggggcaggcaggcctctttttatgggaggaatgaagttaacagttgaccacgaatattatgtccacgtgatcacgcattcggaacatcgatgactt |
5465432 |
T |
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| Q |
430 |
gatgaacaacaacaatgtcatcaatgagttgtcgcaaatgttcagaacgcgtgaatgtgaactatttgattgaacaaccgcaatgtcatgcatcaccacc |
529 |
Q |
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| T |
5465431 |
gatgaacaacagcaaagtcaacaatgagttgtcggaaatgttcagaacgcgtgaatgtgaactatttgattgaacaaccgcaatgtcatgcatcacc--- |
5465335 |
T |
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| Q |
530 |
accaatgatctgaatg |
545 |
Q |
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| T |
5465334 |
accaatgatctgaatg |
5465319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 5465860 - 5465740
Alignment:
| Q |
1 |
ttgagtcattatcgtcaggtcggtttagatgagaatcagccggggagagaatagccggggcgtgattaaccgggttacgggtcgaaacgggttttgggat |
100 |
Q |
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| T |
5465860 |
ttgagtcattatcgtcaggtcggtttagatgagaatcagccggtgagagaatggccggggcgtgggtaacggggttacgggtcgaaacgggttttgggat |
5465761 |
T |
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| Q |
101 |
tgtgggtagtgttttattacg |
121 |
Q |
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| T |
5465760 |
tgtgggtggtgttttattacg |
5465740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 5465656 - 5465582
Alignment:
| Q |
205 |
catgcatttgcaatactatgtattgtgtgaacaaaagaagaataagtacagagttagttagatagattcatatgt |
279 |
Q |
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| T |
5465656 |
catgcatttgcaatactatgtattgtgtgaacaaaagaagaattagtacagagttagttagatagattcatatgt |
5465582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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