View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3505_low_4 (Length: 377)
Name: NF3505_low_4
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3505_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 81 - 362
Target Start/End: Complemental strand, 8093533 - 8093253
Alignment:
| Q |
81 |
gagagggtgccacatattctcccaaagtctaagataatttttcattccgtcacattttttcttgaggagttctcattccgtcgcatgatgtagagattac |
180 |
Q |
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| T |
8093533 |
gagagggtgccacatattctcccaaagtctaagataatttttcattccgtcacattttttcttgaggagttctcattccgtcgcatgatgtagagattac |
8093434 |
T |
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| Q |
181 |
atagattgtaaacattttcatttaacgtgtcacatgatgttgtctaatggcggaacttagcaaatggaccattttttattaaactgttacaattttgtag |
280 |
Q |
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| T |
8093433 |
atagatcgtaaacattttcatttaacgtgtcacatgatgttgtctaatagcggaatttagcaaatggaccattttttattaaagggttacaattttgtag |
8093334 |
T |
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| Q |
281 |
acaagattgttaattcgtaaaagtgaaaaacgaatttgactgacaattataatttcaagaaaaaggaaaatacaaataaatt |
362 |
Q |
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| T |
8093333 |
acaagattgttaattcgtaaaagtgaaaaacaaatttga-tgacaattataatttcaagaaaaaggaaaatacaagtaaatt |
8093253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8093805 - 8093744
Alignment:
| Q |
1 |
ctggtagattttctgacggacgcatgataccagattttgtaggtac--gatttttccaaaaa |
60 |
Q |
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| T |
8093805 |
ctggtagattttctgacggacgcatgataccagattttgtaggtacgagatttttccaaaaa |
8093744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 44879483 - 44879446
Alignment:
| Q |
192 |
acattttcatttaacgtgtcacatgatgttgtctaatg |
229 |
Q |
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| T |
44879483 |
acatattcatttaacgtgtcacacgatgttgtctaatg |
44879446 |
T |
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