View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3505_low_7 (Length: 310)

Name: NF3505_low_7
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3505_low_7
NF3505_low_7
[»] chr6 (5 HSPs)
chr6 (177-294)||(4044785-4044902)
chr6 (1-100)||(4044578-4044677)
chr6 (1-100)||(4125280-4125379)
chr6 (200-241)||(9208281-9208322)
chr6 (200-252)||(28672096-28672148)
[»] chr8 (2 HSPs)
chr8 (200-240)||(26168976-26169016)
chr8 (200-240)||(34694704-34694744)
[»] chr7 (3 HSPs)
chr7 (200-242)||(22696353-22696395)
chr7 (200-252)||(22264618-22264670)
chr7 (200-252)||(47541417-47541469)
[»] chr3 (2 HSPs)
chr3 (200-279)||(4252483-4252564)
chr3 (200-245)||(26158847-26158892)
[»] chr2 (2 HSPs)
chr2 (200-242)||(27269476-27269518)
chr2 (207-244)||(32526209-32526246)
[»] chr4 (1 HSPs)
chr4 (200-252)||(34835558-34835610)
[»] chr1 (2 HSPs)
chr1 (209-245)||(2537736-2537772)
chr1 (206-242)||(39964547-39964583)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 177 - 294
Target Start/End: Original strand, 4044785 - 4044902
Alignment:
Q  177 atccatatggggttggtttaaatatcttagagtttgctcctctcaaggtcttaggtttgattccctttgatgtcaacttcatggaaagtccatacaaagc 276  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  4044785 atccatatggggttggtttaactatcttagagtttgctcctctcaaggtcttaggtttgatttcctctgatgtcaacttcatggaaagtccatacaaagc 4044884  T
Q  277 tttgttttagcttaaatt 294  Q
    |||||||| |||||||||    
T  4044885 tttgttttggcttaaatt 4044902  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4044578 - 4044677
Alignment:
Q  1 ttaaatatctttgttgacaatataatggaagacaaaaattccattagaataaagggactctcgtaaagaagtatctcaaaggtatgaataccacaattaa 100  Q
    |||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4044578 ttaaatctctttgttgacaatataatggaagagacaaattccattagaataaagggattctcgtaaagaagtatctcaaaggtatgaataccacaattaa 4044677  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 4125379 - 4125280
Alignment:
Q  1 ttaaatatctttgttgacaatataatggaagacaaaaattccattagaataaagggactctcgtaaagaagtatctcaaaggtatgaataccacaattaa 100  Q
    |||||| ||||||||||||||||||||||||| | |||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  4125379 ttaaatctctttgttgacaatataatggaagagacaaattccattggaataaagggattctcataaagaagtatctcaaaggtatcaataccacaattaa 4125280  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 9208281 - 9208322
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattccc 241  Q
    ||||| |||||||||||||||||||||| ||||| |||||||    
T  9208281 atcttggagtttgctcctctcaaggtctcaggttcgattccc 9208322  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 28672096 - 28672148
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattccctttgatgtcaa 252  Q
    ||||| ||||||||||||||  |||||||||||| |||||||| || ||||||    
T  28672096 atcttggagtttgctcctctagaggtcttaggttcgattccctctggtgtcaa 28672148  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 26169016 - 26168976
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattcc 240  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  26169016 atcttggagtttgctcctctcaaggtctcaggtttgattcc 26168976  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 34694744 - 34694704
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattcc 240  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  34694744 atcttggagtttgctcctctcaaggtcttaggttcgattcc 34694704  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 22696353 - 22696395
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattccct 242  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||    
T  22696353 atcttggagtgtgctcctctcaaggtctcaggtttgattccct 22696395  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 22264670 - 22264618
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattccctttgatgtcaa 252  Q
    ||||| |||||||||||||||||||||| || || |||||||| || ||||||    
T  22264670 atcttggagtttgctcctctcaaggtctcagattcgattccctctggtgtcaa 22264618  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 47541417 - 47541469
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattccctttgatgtcaa 252  Q
    ||||| |||| ||||||||||||||| ||| ||||||||| ||||| ||||||    
T  47541417 atcttggagtgtgctcctctcaaggttttaagtttgattctctttggtgtcaa 47541469  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 4252564 - 4252483
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattccctttgatgtcaacttcatgga--aagtccatacaaagcttt 279  Q
    ||||| |||| ||||||||||||||||| | |||||||||||| || || ||| ||||  ||  ||||||||||||||||||    
T  4252564 atcttggagtgtgctcctctcaaggtctcaagtttgattccctctggtgccaatttcagtgatcaagtccatacaaagcttt 4252483  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 26158847 - 26158892
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattccctttg 245  Q
    ||||| |||| ||||||||||||||||| |||||| ||||||||||    
T  26158847 atcttggagtgtgctcctctcaaggtctcaggtttcattccctttg 26158892  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 27269518 - 27269476
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattccct 242  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||    
T  27269518 atcttcgagtttgctcctctaaaggttttaggtttgattccct 27269476  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 32526246 - 32526209
Alignment:
Q  207 agtttgctcctctcaaggtcttaggtttgattcccttt 244  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  32526246 agtttgctcctctcaaggtctcaggttcgattcccttt 32526209  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 34835558 - 34835610
Alignment:
Q  200 atcttagagtttgctcctctcaaggtcttaggtttgattccctttgatgtcaa 252  Q
    |||||||||||||||||||| ||||||| | ||| |||||||| || ||||||    
T  34835558 atcttagagtttgctcctcttaaggtctcatgttcgattccctctggtgtcaa 34835610  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 2537736 - 2537772
Alignment:
Q  209 tttgctcctctcaaggtcttaggtttgattccctttg 245  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  2537736 tttgctcctctcaaggtctcaggtttgattccatttg 2537772  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 39964547 - 39964583
Alignment:
Q  206 gagtttgctcctctcaaggtcttaggtttgattccct 242  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  39964547 gagtgtgctcctctcaaggtctcaggtttgattccct 39964583  T

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