View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3505_low_8 (Length: 309)
Name: NF3505_low_8
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3505_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 6504742 - 6505022
Alignment:
| Q |
17 |
aagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504742 |
aagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaat |
6504841 |
T |
|
| Q |
117 |
cccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504842 |
cccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcag |
6504941 |
T |
|
| Q |
217 |
aaataggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6504942 |
aaataggagccaatggtataagctgaattcctgtcctagcttctctccattcaggtggagcaaaccaaagtccactatctc |
6505022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 6464599 - 6464875
Alignment:
| Q |
18 |
agattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatc |
117 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||| | || | |
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| T |
6464599 |
agattagtcaatgagtttccatcatcaaaaccattcaagcttcttatcttcttcaatccactttcattatcataaactccttccaaggcatagacaaacc |
6464698 |
T |
|
| Q |
118 |
ccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcaga |
217 |
Q |
| |
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| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || || ||| ||||||||| ||||| || |||||| |
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| T |
6464699 |
ctttccatccttctccaa---caccttccctattcaaagcaggcaatgtccactccacaagttccttcacaaaatcaacatttgaaaataagaattcaga |
6464795 |
T |
|
| Q |
218 |
aataggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctc |
297 |
Q |
| |
|
||| ||| |||||||| |||||||| || |||| |||| ||||||||| ||||||||||| | |||||| |||| |
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|
| T |
6464796 |
aattggaagcaatggtaagagctgaatcccaagcctacattctttccattcaggaggagcaaaccataatccactgtctc |
6464875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 6473955 - 6473679
Alignment:
| Q |
18 |
agattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatc |
117 |
Q |
| |
|
||||||||||| || |||||| ||||||| | |||||| ||| |||| ||||||||| |||||||||||||||||||||||| ||||| ||| | || | |
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|
| T |
6473955 |
agattagtcaatgaatttccatcatcaaatctattcaaactttttatattcttcaatccactttcattatcataaattccttgcaatgcatagacaaaac |
6473856 |
T |
|
| Q |
118 |
ccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcaga |
217 |
Q |
| |
|
| |||||||||||| ||||||| ||||||||| |||||| ||||||||||||| ||||| || || |||||||||||||| ||||||||| ||||||| |
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|
| T |
6473855 |
ctttccatccttcttcaacacc---ttccctatttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttcaga |
6473759 |
T |
|
| Q |
218 |
aataggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctc |
297 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||| |||| ||||| |||| ||||||||||| | |||||| |||| |
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|
| T |
6473758 |
aataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctc |
6473679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 6517026 - 6516812
Alignment:
| Q |
17 |
aagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
6517026 |
aagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgcataccgaaat |
6516927 |
T |
|
| Q |
117 |
cccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcag |
216 |
Q |
| |
|
||| |||||| | | || ||||| | | || |||| |||||||| |||||||||||| ||||| |||||||||||||||||||| ||| |||||| |
|
|
| T |
6516926 |
cccgtccatctgttt---tcagcacctaacgttttgaaaggaggcaatgcccactcaacaagttctttcacataatcaacatcagaaaataaaacttcag |
6516830 |
T |
|
| Q |
217 |
aaataggagccaatggta |
234 |
Q |
| |
|
|||| ||| |||||||| |
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|
| T |
6516829 |
aaattggacacaatggta |
6516812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 6462734 - 6462457
Alignment:
| Q |
17 |
aagattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaat |
116 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| || || || ||||||| |||||||||||| |||| |||||||||||||||| || | ||||| || |
|
|
| T |
6462734 |
aagattagtcaatgagtttccatcatcaaatccttttaaatttcttatattcttcaatgcagtttccttatcataaattccttgtaaagcatatacaaac |
6462635 |
T |
|
| Q |
117 |
cccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcag |
216 |
Q |
| |
|
|| |||||||||||| |||||||| || || |||||||||||||||||||| |||||||| | || ||||| ||||||||||| ||||| |||||| |
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|
| T |
6462634 |
cctttccatccttcttcaacaccatct---cttttcaaagcaggcaatgtccattcaacaagttgcttcacatattcaacatcagagaacaatacttcag |
6462538 |
T |
|
| Q |
217 |
aaataggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctc |
297 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||| |||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
6462537 |
aaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctc |
6462457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 6495939 - 6496215
Alignment:
| Q |
18 |
agattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatc |
117 |
Q |
| |
|
||||||||||| ||||||||| ||||||| || || || ||||||| |||||||||||| |||| |||||||||||||||| || | ||||| || | |
|
|
| T |
6495939 |
agattagtcaatgagtttccatcatcaaatccttttaaatttcttatattcttcaatgcattttccttatcataaattccttgtaaggcatatacaaacc |
6496038 |
T |
|
| Q |
118 |
ccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcaga |
217 |
Q |
| |
|
| |||||||||||| |||||||| || || |||||||||||||||| ||| |||||||| | || ||||| || |||||||| ||||| ||||||| |
|
|
| T |
6496039 |
ctttccatccttcttcaacacca---tctcttttcaaagcaggcaatgcccattcaacaagttgcttcacatattcgacatcagagaacaatacttcaga |
6496135 |
T |
|
| Q |
218 |
aataggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctc |
297 |
Q |
| |
|
||||||| |||||||| ||||||| ||| |||| |||| | |||| | ||||||||||||||||||||| |||| |
|
|
| T |
6496136 |
aataggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctc |
6496215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 6525637 - 6525899
Alignment:
| Q |
18 |
agattagtcaaagagtttccaccatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatc |
117 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| ||||| |||||||||||| | ||||||||||||||||||||| |||| ||| | ||| | || | |
|
|
| T |
6525637 |
agattagtcaatgagtttccatcatcaaaacccttcaactttcttatcttctgctgtgcactttcattatcataaatcccttgcaaggcataaacaaacc |
6525736 |
T |
|
| Q |
118 |
ccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcaga |
217 |
Q |
| |
|
||||||| || ||| |||||||| ||||| || |||||||| ||||||||||| ||||| | || ||||| ||||||||| ||||| ||||||| |
|
|
| T |
6525737 |
ccttccaaccctcttcaacacca---tccctttttaaagcaggtaatgtccactccacaagtcccttcacatacataacatcagagaacaagacttcaga |
6525833 |
T |
|
| Q |
218 |
aataggagccaatggtataagctgaattcctgtcctagcttctctccattcagctggagcaaacca |
283 |
Q |
| |
|
||| ||| |||||||| |||||||| || |||| |||| |||||||||||||| ||||||| |
|
|
| T |
6525834 |
aattggaagcaatggtaagagctgaatcccaagcctacattctttccattcagctggaccaaacca |
6525899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 3754700 - 3754649
Alignment:
| Q |
58 |
ttcttatcttcttcaatgcactttcattatcataaattccttccaatgaata |
109 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||||| ||| ||||| |
|
|
| T |
3754700 |
ttctaatcttcttcaatgcattttctttatcataaattccttgcaaagaata |
3754649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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