View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3505_low_9 (Length: 301)
Name: NF3505_low_9
Description: NF3505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3505_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 113 - 291
Target Start/End: Complemental strand, 49758110 - 49757932
Alignment:
| Q |
113 |
ccacagctgtactgacctatgctgcagctgcacctttgtccccatcaccaaataatctttgcttgaaatcagcgaccattagaggaagtccctcacggag |
212 |
Q |
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| T |
49758110 |
ccacagctgtactgacctatgctgcagctgcacctttgtccccatcaccaaataatctttgcttgaaatcagcgaccattagaggaagtccctcacggag |
49758011 |
T |
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| Q |
213 |
ggacacagatggttgccagccaagaagctcttttgctttggagatgtctggctttctcttatgtggatcatcctctgtg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49758010 |
ggacacagatggttgccagccaagaagctcttttgctttggagatgtctggctttctcttatgtggatcatcctctgtg |
49757932 |
T |
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