View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3506_high_12 (Length: 326)
Name: NF3506_high_12
Description: NF3506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3506_high_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 26562681 - 26562600
Alignment:
| Q |
245 |
ttgtgatgcatgtccatcattctgacccatgtttactccatcttccacggaacctgttgctattcatgtttggttctgctgt |
326 |
Q |
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| T |
26562681 |
ttgtgatgcatgtccatcattctgacccatgtttactccatcttccacggaacctgttgctattcatgtttggttctgctgt |
26562600 |
T |
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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 26562723 - 26562683
Alignment:
| Q |
9 |
agcataggtgagtgtcgctctatctaacaattgaacaatat |
49 |
Q |
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| T |
26562723 |
agcataagtgagtgtcgctctatctaacaattgaacaatat |
26562683 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 3222360 - 3222396
Alignment:
| Q |
179 |
cacttgagtaaaacctaaattcataagccacaaaagc |
215 |
Q |
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| T |
3222360 |
cacttgagtaaaacctaaattcataagccactaaagc |
3222396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 30780136 - 30780204
Alignment:
| Q |
184 |
gagtaaaacctaaattcataagccacaaaagcgcttgccattggccccatgcttctgcttcttgtgatg |
252 |
Q |
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| T |
30780136 |
gagtaaaacctgaattcataaaccacaaaagtgcttgctttaggccacatgctttcgcttcttgagatg |
30780204 |
T |
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