View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3506_high_13 (Length: 321)

Name: NF3506_high_13
Description: NF3506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3506_high_13
NF3506_high_13
[»] chr3 (1 HSPs)
chr3 (16-321)||(6835916-6836223)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 6836223 - 6835916
Alignment:
Q  16 gccatttaaacattcttaagtgcaaaaatagaaggagggatctaannnnnnnngttgtggatataattaagcccattcttaatacattgtatgacaagaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| ||||||||||||||||||||||||||    
T  6836223 gccatttaaacattcttaagtgcaaaaatagaaggagggatctaattttttttgttgtggatataattaagcctattcttaatacattgtatgacaagaa 6836124  T
Q  116 attggcttgatggctcattaaattaacgatttgagcaatataacaaatatgataaaaattgattttttagggga-aaaatataaaaaattgttgatcatt 214  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6836123 attggcttgatggctcattaaatgaacgatttgagcaatataacaaatatgataaaaattgattttttaggggaaaaaatataaaaaattgttgatcatt 6836024  T
Q  215 aatgagttgaaattgaaattaagattaatatattcatcgaacttatatgtgaaaatg-nnnnnnnttagatttttattgaacattgaaagagttagaaca 313  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||    
T  6836023 aatgacttgaaattgaaattaagattaatatattcatcgaacttatatgtgaaaatgaaaaaaaattagatttttattgaacattgaaagggttagaaca 6835924  T
Q  314 ttttctca 321  Q
    ||||||||    
T  6835923 ttttctca 6835916  T

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