View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3506_high_14 (Length: 316)
Name: NF3506_high_14
Description: NF3506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3506_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 33174900 - 33175102
Alignment:
| Q |
18 |
taatgcagttatatatatagtatggtctagttgatcatgttcatgccaacagattaaacttgtatattccatcaaagctgtcccttccaacctcataggg |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33174900 |
taatgaagttatatatatagtatggtctagttgatcatgttcatgccaacagattaaacttgtatattccatcaaagctgtcccttccaacctcataggg |
33174999 |
T |
|
| Q |
118 |
aaaggtatatgcgtttcataaacgacacatccacgtactcatgcattgcttttataaaggtgaagaagataaaacgattttggaaaaaagtagttagtta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33175000 |
aaaggtatatgcgtttcataaacgacacatccacgtactcatgcattgcttttataaaggtgaagaagataaaacgattttggaaaaaagtagttagtta |
33175099 |
T |
|
| Q |
218 |
tta |
220 |
Q |
| |
|
||| |
|
|
| T |
33175100 |
tta |
33175102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 33175136 - 33175191
Alignment:
| Q |
251 |
catcagctattacagtgaattactccatcaactttaacaccaataattttcctttg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33175136 |
catcagctattacagtgaattactccatcaactttaacaccaataattttcctttg |
33175191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University