View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3506_high_15 (Length: 314)
Name: NF3506_high_15
Description: NF3506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3506_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 18061811 - 18061924
Alignment:
| Q |
10 |
tcagtatcactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaagtgtcag |
109 |
Q |
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| T |
18061811 |
tcagtatcactgtcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaagtgtcag |
18061910 |
T |
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| Q |
110 |
tacccttttggagc |
123 |
Q |
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| T |
18061911 |
tacccttttggagc |
18061924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 55565971 - 55566067
Alignment:
| Q |
6 |
atcatcagtatcactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaa |
102 |
Q |
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| T |
55565971 |
atcatcagtatcattgtcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaa |
55566067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 55565924 - 55566004
Alignment:
| Q |
22 |
tcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaa |
102 |
Q |
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| T |
55565924 |
tcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaa |
55566004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 18062005 - 18062059
Alignment:
| Q |
249 |
ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttt |
303 |
Q |
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| T |
18062005 |
ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttt |
18062059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 18061870 - 18061939
Alignment:
| Q |
6 |
atcatcagtatcactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatca |
75 |
Q |
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| T |
18061870 |
atcatcagtatcattgtcattttccggttctaaagtgtcagtacccttttggagcgtatcataatcatca |
18061939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 18061707 - 18061760
Alignment:
| Q |
24 |
attttccggttctaaaatgtaactagccctttgg-agcttatcataatcatcag |
76 |
Q |
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| T |
18061707 |
attttccggttctaaaatgtcactagccttttggtagcttatcatcatcatcag |
18061760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 18061716 - 18061757
Alignment:
| Q |
249 |
ttctaaaatgtcactagccttttgg-agcttatcatcatcat |
289 |
Q |
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| T |
18061716 |
ttctaaaatgtcactagccttttggtagcttatcatcatcat |
18061757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 18061989 - 18062045
Alignment:
| Q |
17 |
cactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcat |
73 |
Q |
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| T |
18061989 |
cactgtaatttacaggttctaaaatgtcactagccttttggagcttatcatcatcat |
18062045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 55566034 - 55566069
Alignment:
| Q |
6 |
atcatcagtatcactgtcattttccggttctaaaat |
41 |
Q |
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| T |
55566034 |
atcatcagtatcattgtcattttccggttctaaaat |
55566069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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