View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3506_high_2 (Length: 521)

Name: NF3506_high_2

Description: NF3506

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3506_high_2

[»] chr8 (2 HSPs)

[»] chr4 (3 HSPs)

Alignment Details

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 43; E-Value: 0.000000000000003

Query Start/End: Original strand, 348 - 521

Target Start/End: Complemental strand, 12933984 - 12933811

Alignment:

Q	348	tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta	446	Q
		\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \|\|
T	12933984	tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt	12933885	T

Q	447	cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca	521	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	12933884	ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca	12933811	T

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Target: chr8; HSP #2

Raw Score: 30; E-Value: 0.0000002

Query Start/End: Original strand, 461 - 498

Target Start/End: Complemental strand, 36999974 - 36999937

Alignment:

Q	461	ggttgctccatataaatctcctcttccaaatctccatg	498	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	36999974	ggttgctccatataaatctcctcttccaagtcaccatg	36999937	T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 43; E-Value: 0.000000000000003

Query Start/End: Original strand, 348 - 521

Target Start/End: Original strand, 28608621 - 28608794

Alignment:

Q	348	tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta	446	Q
		\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \|\|
T	28608621	tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt	28608720	T

Q	447	cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca	521	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	28608721	ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca	28608794	T

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Target: chr4; HSP #2

Raw Score: 40; E-Value: 0.0000000000002

Query Start/End: Original strand, 371 - 521

Target Start/End: Complemental strand, 14177231 - 14177081

Alignment:

Q	371	taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc	469	Q
		\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \| \|\|\|\|\| \|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|
T	14177231	taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc	14177133	T

Q	470	atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca	521	Q
		\|\| \|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	14177132	atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca	14177081	T

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Target: chr4; HSP #3

Raw Score: 30; E-Value: 0.0000002

Query Start/End: Original strand, 460 - 513

Target Start/End: Complemental strand, 20706234 - 20706182

Alignment:

Q	460	tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt	513	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|
T	20706234	tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt	20706182	T

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