View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3506_high_8 (Length: 351)
Name: NF3506_high_8
Description: NF3506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3506_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 11403890 - 11403655
Alignment:
| Q |
1 |
ttaaaattgagtgatgaattcaattctagattttataaaacgggagaactaaaattgcgtaactaaaagtagaaaga----ctnnnnnnnntcaaaatgg |
96 |
Q |
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| T |
11403890 |
ttaaaattgagtgatgaattcaattctagattttataaaaccggagaactaaaattgcgtagctaaaagtagaaagaaagactaaaaaaa-tcaaaatgg |
11403792 |
T |
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| Q |
97 |
acaacgtaaaaggcttaacaatattataataactaaacctagataaatcaagagaaatgatatttgtacaattattgacaaattttttgataactttatc |
196 |
Q |
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| T |
11403791 |
acaacgtaaaaggcttaacaatattataataattaa-cctagataaattaagagaaatgatatttgtacaattattgacaaattttttgataactttctc |
11403693 |
T |
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| Q |
197 |
ttttatatccacattgtattcttattttttacaataac |
234 |
Q |
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| T |
11403692 |
ttttatatctatattgtattcttactttttacaataac |
11403655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 11403595 - 11403546
Alignment:
| Q |
294 |
attcatgaaagagaatatgggtgtacaaactattttttatgtctgtggtg |
343 |
Q |
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| T |
11403595 |
attcatgaaagagaatatgggtgtacaaactattttttatgtctgtggtg |
11403546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 336877 - 336807
Alignment:
| Q |
149 |
agaaatgatatttgtacaatta---ttgacaaattttttgataactttatcttttatatccacattgtatt |
216 |
Q |
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| T |
336877 |
agaaatgatatttgtacaattatttttgacaatttttgtgacaactttctctctcatattcacattgtatt |
336807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 41273459 - 41273535
Alignment:
| Q |
150 |
gaaatgatatttgtacaattattgacaaattttttgataactttatcttttatatccacattgtattcttatttttt |
226 |
Q |
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| T |
41273459 |
gaaatgatatttgtacaatatttatcaatttttgcgacaactttatcttttatactcatattatattcttatttttt |
41273535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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