View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3506_high_9 (Length: 346)
Name: NF3506_high_9
Description: NF3506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3506_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 51123686 - 51124022
Alignment:
| Q |
10 |
acaaagggttgaggttttgatggaatgttgatgcaacttatggaatagctgttaggctatgtatatatgattgttgaggtttctaaatatgcttttatag |
109 |
Q |
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| T |
51123686 |
acaaagggttgaggttttgatggaatgttgatgcaacttatggaatagctgttaggctatgtatatatgattgttgaggtttctaaatatgcttttatag |
51123785 |
T |
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| Q |
110 |
tcaaagaagaattgtttggttctgttctatatatgttaagaaattttcggtggttatatataccacttggactatagaataagcaattgccttgaatagt |
209 |
Q |
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| T |
51123786 |
tcaaagaagaattgtttggttctgttctatatatgttaagaaattttcggtggttatatataccacttggactatagaataagcaattgccttgaatagt |
51123885 |
T |
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| Q |
210 |
tgtttgctttatcaaggaatgagtagtcaacatgtatttgtattagagcctaacgccattaccaatatctccaagtgcgtatttttatactttggggact |
309 |
Q |
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| T |
51123886 |
tgtttgctttatcaaggaatgagtagtcaacatgtatttgtattagagcctaatgccattaccaatatctccaagtgcgtatttttatactttagggatt |
51123985 |
T |
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| Q |
310 |
aaattaacggattttaatacgtaagatctaactcaat |
346 |
Q |
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| T |
51123986 |
aaattgacggattttaatacataagatctaactcaat |
51124022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 113 - 272
Target Start/End: Complemental strand, 32150139 - 32149981
Alignment:
| Q |
113 |
aagaagaattgtttggttctgttctatatatgttaagaaattttcggtggttatatataccacttggactatagaataagcaattgccttgaatagttgt |
212 |
Q |
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| T |
32150139 |
aagaagaattgtttggtcttgttctatat--gttaaattttttttggtggttatata--ccacttgggctatagaataagcaattgccttgaatagttgt |
32150044 |
T |
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| Q |
213 |
ttgctttatcaaggaatgagtagtcaa---catgtatttgtattagagcctaacgccattacc |
272 |
Q |
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| T |
32150043 |
ttgctttatcaaggaatgagtagtcaatagcatgtatttgtattagagcctaatgccattacc |
32149981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 32150190 - 32150143
Alignment:
| Q |
23 |
gttttgatggaatgttgatgcaacttatggaatagctgttaggctatg |
70 |
Q |
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| T |
32150190 |
gttttgatggaatgttgatgcaacttatggaagagatgttaggctatg |
32150143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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