View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3507_high_1 (Length: 455)
Name: NF3507_high_1
Description: NF3507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3507_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 77 - 441
Target Start/End: Complemental strand, 3775600 - 3775236
Alignment:
| Q |
77 |
tatccatgaagaatctcttcatttcctacttttaaattttttaattcctcttaacaagagcatcattcaccacnnnnnnnnnnnnnnnnnaggtgggtga |
176 |
Q |
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| T |
3775600 |
tatccatgaagaatctcttcatttcctacttttaaattttttaattcctcttaacaagagcatcattcaccacttttttattttatttttaggtgggtga |
3775501 |
T |
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| Q |
177 |
aaagggataatgtaatttatagcatatactctttgaaacctatcttattagacccaccacaagattgcttttcatataaactataactttttctgtaaag |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3775500 |
aaagggataatgtaatttatagcatatactctttgaaacctatcttattagacccaccacaagattgcttttcatataaactataactttttatgtaaag |
3775401 |
T |
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| Q |
277 |
acaacaaattaaacagtgaaagatacaattgaaaaattgaaaatatacctgacggaatatctgatgaagttctccattttgttttgcaaatagcactatt |
376 |
Q |
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| T |
3775400 |
acaacaaattaaacagtgaaagatacaattgaaaaattgaaaatatacctgacggaatatctgatgaagttctccattttgttttgcaaatagcactatt |
3775301 |
T |
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| Q |
377 |
gaaaccagctttctgaagcctcatagaaacttccctcattaagcagtttctgcaggtggtgatgg |
441 |
Q |
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| T |
3775300 |
gaaaccagctttctgaagcctcatagaaacttccctcattaagcagtttctgcaggtggtgatgg |
3775236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 319 - 423
Target Start/End: Complemental strand, 3807312 - 3807208
Alignment:
| Q |
319 |
atatacctgacggaatatctgatgaagttctccattttgttttgcaaatagcactattgaaaccagctttctgaagcctcatagaaacttccctcattaa |
418 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||||| || |||||||||||||||| |
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| T |
3807312 |
atatacctgatggaatatctgatgaagttctccattttgttttacaaatagcaatattgaaaccagttttgtgaagcctcgtaaaaacttccctcattaa |
3807213 |
T |
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| Q |
419 |
gcagt |
423 |
Q |
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||||| |
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| T |
3807212 |
gcagt |
3807208 |
T |
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