View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3507_low_2 (Length: 209)
Name: NF3507_low_2
Description: NF3507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3507_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 43895615 - 43895421
Alignment:
| Q |
1 |
tttgatcttcctgatatgatctcttctgcacctcaatatccaggtaattagtctattttttgggtcactaccattttggaacctaatttgaaaaaataaa |
100 |
Q |
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| T |
43895615 |
tttgatcttcctgatatgatctcttctgcacctcaatatccaggtaattagtctattttttgggtcaccaccattttggaacctaatttgaaaaaataaa |
43895516 |
T |
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| Q |
101 |
gttagattgacaaatattagtggaccgaccatccttnnnnnnnntattagtggacc--gaccatgttagtattttggtttgtccacggactaatt |
193 |
Q |
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| T |
43895515 |
gttagattgacaaatattagtggaccgaccatccttaaaaaaaatattagtggaccgagaccatgttagttttttggtttgtccacggactaatt |
43895421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 43907030 - 43906991
Alignment:
| Q |
83 |
ctaatttgaaaaaataaagttagattgacaaatattagtg |
122 |
Q |
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| T |
43907030 |
ctaatttgaaaaaatagagttagattgacaaatattagtg |
43906991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43907119 - 43907073
Alignment:
| Q |
1 |
tttgatcttcctgatatgatctcttctgcacctcaatatccaggtaa |
47 |
Q |
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| T |
43907119 |
tttgatcttcctgatatgatatcttctgcccctcaattgccaggtaa |
43907073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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