View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3508_high_13 (Length: 287)
Name: NF3508_high_13
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_high_13 |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 33993272 - 33993558
Alignment:
| Q |
1 |
tgagatgaatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatgaagagccgaggagtttacgaaactcca |
100 |
Q |
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| T |
33993272 |
tgagctgaatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatgaagagccgaggagtttacgaaactcca |
33993371 |
T |
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| Q |
101 |
ggtggcaccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgcag |
200 |
Q |
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| T |
33993372 |
ggtggcaccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgcag |
33993471 |
T |
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| Q |
201 |
agttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggtt |
287 |
Q |
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| T |
33993472 |
agttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggtt |
33993558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 34000281 - 34000560
Alignment:
| Q |
8 |
aatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatgaagagccgaggagtttacgaaactccaggtggca |
107 |
Q |
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| T |
34000281 |
aatgagataggtggaaggcatggaataggctgtgtcgatatagttgaaaaccacattgtaggcctgaagagccgaggagtttatgaaactccaggtggca |
34000380 |
T |
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| Q |
108 |
ccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgcagagttagt |
207 |
Q |
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| T |
34000381 |
ccattttcttcaccgcagcaagagacttagagagtttaacactcgatcgtgaaacacttcagcttaaagactcgttagcaattaagtatgcagagttagt |
34000480 |
T |
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| Q |
208 |
gtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggtt |
287 |
Q |
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| T |
34000481 |
gtatgctggaaggtggttcgatcctcttcgtgagtcaatggatgcattcatggaaaagatctcagagattacaacaggtt |
34000560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 18852689 - 18852410
Alignment:
| Q |
8 |
aatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatgaagagccgaggagtttacgaaactccaggtggca |
107 |
Q |
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| T |
18852689 |
aatgagataggtggaaggcacggaattggccggatcgacatggttgagaatcggcttgtaggcatgaaaagccgcggagtttacgaaacacctggtggaa |
18852590 |
T |
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| Q |
108 |
ccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgcagagttagt |
207 |
Q |
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| T |
18852589 |
ctatcctttttgctgccgcacgggagttggagtctttgacacttgatcgagaaacaatacaggtcaaagattcattagcacttaaatatgcagagttagt |
18852490 |
T |
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| Q |
208 |
gtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggtt |
287 |
Q |
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| T |
18852489 |
gtatgccggaagatggtttgatccacttcgcgaatccatggatgcctttatgcagaagattacagagaccacaacaggtt |
18852410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 42865800 - 42865559
Alignment:
| Q |
8 |
aatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatgaagagccgaggagtttacgaaactccaggtggca |
107 |
Q |
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|||||||||||||||| ||| ||||| ||||| ||||| ||||||| | | ||||||||||||||||||| |||||||| |||||||| ||||| | |
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| T |
42865800 |
aatgagataggtggaaagcacggaattggccggatcgacatggttgagaataggcttgtaggcatgaagagccgtggagtttatgaaactcctggtggga |
42865701 |
T |
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| Q |
108 |
ccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgcagagttagt |
207 |
Q |
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| T |
42865700 |
ctatcctctttaaagcagcacgggagttggagtctttgacacttgatcgagaaacaatacaggtgaaagatacattagcccttaaatatgcagagttagt |
42865601 |
T |
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| Q |
208 |
gtatgctggaagatggtttgatccacttcgcgaatcgatgga |
249 |
Q |
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| T |
42865600 |
gtatgctggtagatggtttgatccacttcgtgagtcgatgga |
42865559 |
T |
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