View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3508_high_14 (Length: 284)

Name: NF3508_high_14
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3508_high_14
NF3508_high_14
[»] chr3 (11 HSPs)
chr3 (153-250)||(38482751-38482848)
chr3 (20-147)||(51545818-51545955)
chr3 (14-115)||(40496923-40497024)
chr3 (14-115)||(24709160-24709261)
chr3 (14-115)||(41346197-41346298)
chr3 (14-151)||(13542795-13542942)
chr3 (14-115)||(48737676-48737777)
chr3 (14-115)||(48169874-48169975)
chr3 (14-115)||(54014387-54014488)
chr3 (14-115)||(50676624-50676724)
chr3 (20-115)||(30462826-30462919)
[»] chr8 (11 HSPs)
chr8 (14-147)||(18575178-18575321)
chr8 (14-115)||(11254650-11254751)
chr8 (14-154)||(38069895-38070045)
chr8 (14-115)||(27820923-27821024)
chr8 (20-147)||(17493682-17493819)
chr8 (14-115)||(39907058-39907159)
chr8 (14-115)||(12738415-12738516)
chr8 (15-104)||(17336030-17336119)
chr8 (14-115)||(9753920-9754020)
chr8 (14-115)||(13243596-13243696)
chr8 (20-115)||(11147807-11147900)
[»] scaffold0519 (1 HSPs)
scaffold0519 (14-115)||(10642-10743)
[»] chr2 (16 HSPs)
chr2 (14-115)||(29194138-29194239)
chr2 (20-115)||(2110376-2110471)
chr2 (14-115)||(28585732-28585833)
chr2 (14-115)||(4828138-4828239)
chr2 (14-115)||(43370824-43370925)
chr2 (14-115)||(45080469-45080568)
chr2 (14-115)||(1779121-1779222)
chr2 (14-115)||(8381365-8381466)
chr2 (14-115)||(9370524-9370625)
chr2 (14-115)||(43377257-43377356)
chr2 (14-115)||(16970306-16970405)
chr2 (60-115)||(30422588-30422643)
chr2 (14-83)||(42846990-42847057)
chr2 (20-115)||(31921670-31921763)
chr2 (49-115)||(25898766-25898832)
chr2 (44-104)||(39646366-39646426)
[»] chr4 (18 HSPs)
chr4 (14-151)||(37064756-37064903)
chr4 (14-115)||(39788143-39788244)
chr4 (14-115)||(925185-925286)
chr4 (14-115)||(17493903-17494004)
chr4 (14-115)||(20789823-20789923)
chr4 (14-115)||(40071498-40071599)
chr4 (14-115)||(54438206-54438307)
chr4 (14-111)||(34408710-34408807)
chr4 (14-115)||(47199636-47199737)
chr4 (14-112)||(33800835-33800933)
chr4 (14-115)||(32217986-32218087)
chr4 (24-115)||(51744568-51744659)
chr4 (14-115)||(52101198-52101299)
chr4 (14-111)||(53509695-53509792)
chr4 (14-115)||(21240476-21240577)
chr4 (14-115)||(28910207-28910306)
chr4 (14-115)||(3172069-3172169)
chr4 (22-99)||(46870765-46870840)
[»] scaffold0047 (1 HSPs)
scaffold0047 (14-115)||(69903-70004)
[»] chr7 (14 HSPs)
chr7 (14-115)||(4041097-4041198)
chr7 (14-115)||(27596135-27596236)
chr7 (14-115)||(6392421-6392522)
chr7 (14-115)||(40232164-40232265)
chr7 (14-147)||(25943656-25943797)
chr7 (14-115)||(29737555-29737656)
chr7 (14-115)||(31689402-31689503)
chr7 (14-115)||(38276594-38276695)
chr7 (14-115)||(41427697-41427798)
chr7 (14-115)||(24300203-24300294)
chr7 (14-102)||(48838210-48838296)
chr7 (14-115)||(21442849-21442948)
chr7 (20-115)||(22338126-22338219)
chr7 (20-115)||(22619908-22620001)
[»] chr5 (7 HSPs)
chr5 (14-115)||(42897423-42897524)
chr5 (16-115)||(36982338-36982437)
chr5 (20-147)||(14044212-14044348)
chr5 (14-115)||(2970715-2970815)
chr5 (14-104)||(36767936-36768024)
chr5 (20-115)||(33404387-33404480)
chr5 (48-115)||(5712600-5712667)
[»] chr1 (12 HSPs)
chr1 (14-115)||(38321795-38321896)
chr1 (14-115)||(50777147-50777248)
chr1 (16-115)||(1929266-1929365)
chr1 (14-115)||(32045983-32046084)
chr1 (14-115)||(46862706-46862807)
chr1 (14-115)||(39150946-39151047)
chr1 (14-115)||(28036749-28036851)
chr1 (15-115)||(1207501-1207601)
chr1 (14-115)||(8229213-8229315)
chr1 (37-115)||(46371094-46371172)
chr1 (14-115)||(40562485-40562584)
chr1 (14-115)||(9129450-9129552)
[»] chr6 (12 HSPs)
chr6 (16-115)||(28541636-28541735)
chr6 (14-115)||(12350422-12350523)
chr6 (14-115)||(29182741-29182842)
chr6 (5-115)||(30736560-30736670)
chr6 (14-115)||(1241259-1241359)
chr6 (14-115)||(16435929-16436026)
chr6 (14-115)||(7271127-7271228)
chr6 (14-115)||(31013544-31013645)
chr6 (14-110)||(13042122-13042217)
chr6 (14-115)||(31833640-31833736)
chr6 (14-112)||(1870684-1870780)
chr6 (26-115)||(13210506-13210592)
[»] scaffold0016 (1 HSPs)
scaffold0016 (14-115)||(92218-92319)
[»] scaffold0061 (1 HSPs)
scaffold0061 (14-115)||(10066-10167)
[»] scaffold0532 (1 HSPs)
scaffold0532 (14-115)||(3964-4065)
[»] scaffold0318 (1 HSPs)
scaffold0318 (14-61)||(16507-16554)
[»] scaffold1194 (1 HSPs)
scaffold1194 (21-104)||(1127-1208)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 38482751 - 38482848
Alignment:
Q  153 taccaaattagaattatggatttagctctcaatgttacgtggcatgtcgaacacattatttggtggttgcttgtaactcttaaatcgtcgtgcaactt 250  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38482751 taccaaattagaattatggatttagctctcaatgttacctggcatgtcgaacacattatttggtggttgcttgtaactcttaaatcgtcgtgcaactt 38482848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 51545818 - 51545955
Alignment:
Q  20 taatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt------ 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||          
T  51545818 taatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaatctg 51545917  T
Q  114 ----aaatgatcaaataggtcacttattcaaggacgga 147  Q
        |||||||||||||||||||||||||| |||||||    
T  51545918 tgtgaaatgatcaaataggtcacttattcagggacgga 51545955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 40496923 - 40497024
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  40496923 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 40497022  T
Q  114 aa 115  Q
    ||    
T  40497023 aa 40497024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 24709160 - 24709261
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  24709160 agaaagtaatcattacttaaaagtgaaaaaatttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 24709259  T
Q  114 aa 115  Q
    ||    
T  24709260 aa 24709261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 41346197 - 41346298
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  41346197 agaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaagtatcacttactttctttcatctttacacttttctt 41346296  T
Q  114 aa 115  Q
    ||    
T  41346297 aa 41346298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 13542942 - 13542795
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  13542942 agaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaagtatcaatctctttctttcatctttacacttttctt 13542843  T
Q  114 ----------aaatgatcaaataggtcacttattcaaggacggatgga 151  Q
              ||||| |||||||||||||||||||| |||||||||||    
T  13542842 aatctatatgaaatggtcaaataggtcacttattcagggacggatgga 13542795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 48737676 - 48737777
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||| ||| ||||||||    
T  48737676 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattttctttctttcatctctacacttttctt 48737775  T
Q  114 aa 115  Q
    ||    
T  48737776 aa 48737777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 48169874 - 48169975
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||| |||||||| ||||||||    
T  48169874 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcagctcagtaatagtatcactctctttcttttatctttacacttttctt 48169973  T
Q  114 aa 115  Q
    ||    
T  48169974 aa 48169975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 54014387 - 54014488
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  54014387 agaaagtaattattacttaaaagtgaaaaagtttcaaaataatgataagggcaactcagtaaaagtatcactctctttcttttatctttacacttttctt 54014486  T
Q  114 aa 115  Q
    ||    
T  54014487 aa 54014488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 50676624 - 50676724
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| ||||||||    
T  50676624 agaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagg-caactcagtaaaaatatcactctctttcttttatctttacacttttctt 50676722  T
Q  114 aa 115  Q
    ||    
T  50676723 aa 50676724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 30462826 - 30462919
Alignment:
Q  20 taatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||| |||| |||||||||||   |||| |||||||| | |||| ||| ||||||||| ||||||| | |||||||||||||||  ||||||||||    
T  30462826 taattattatttaaaagtgaag--gtttaaaaataataataagggcaattcagtaaaaatatcactctatttctttcatctttatacttttcttaa 30462919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 18575178 - 18575321
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  18575178 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 18575277  T
Q  114 ----------aaatgatcaaataggtcacttattcaaggacgga 147  Q
              |||||||||||||||||||||||||| |||||||    
T  18575278 aatttgtgtgaaatgatcaaataggtcacttattcagggacgga 18575321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 11254650 - 11254751
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  11254650 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 11254749  T
Q  114 aa 115  Q
    ||    
T  11254750 aa 11254751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 38070045 - 38069895
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  38070045 agaaaataatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactatctttctttcatctttacacttttctt 38069946  T
Q  114 ----------aaatgatcaaataggtcacttattcaaggacggatggaata 154  Q
              ||||| ||||||||||||||| |||||||||||| ||||||    
T  38069945 aatctgtgtgaaatggtcaaataggtcacttgttcaaggacggagggaata 38069895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 27820923 - 27821024
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  27820923 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttttatctttacacttttctt 27821022  T
Q  114 aa 115  Q
    ||    
T  27821023 aa 27821024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 17493682 - 17493819
Alignment:
Q  20 taatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt------ 113  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||          
T  17493682 taatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaacttagtaaaagtatcactctctttctttcatctttacacttttcttaatctg 17493781  T
Q  114 ----aaatgatcaaataggtcacttattcaaggacgga 147  Q
        |||||||||||||||||||||||||| |||||||    
T  17493782 tgtgaaatgatcaaataggtcacttattcagggacgga 17493819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 39907058 - 39907159
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  39907058 agaaagtaatcattacttaaaagtgaaaaaatttcaaaataatgataagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 39907157  T
Q  114 aa 115  Q
    ||    
T  39907158 aa 39907159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 12738516 - 12738415
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| | ||||||||| |||||||| ||||||||    
T  12738516 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattatctttcttttatctttacacttttctt 12738417  T
Q  114 aa 115  Q
    ||    
T  12738416 aa 12738415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 17336119 - 17336030
Alignment:
Q  15 gaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttac 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||| | ||||||||||||||||||    
T  17336119 gaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacagttcagtaaaaatatcattctctttctttcatctttac 17336030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 9753920 - 9754020
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatga-caaggacaactcagtaaaagtatcactttctttctttcatctttactcttttct 112  Q
    ||||| |||||||||||||||||||||   ||||||||||||| | ||||||||| ||||||||| ||||| | |||||||||||||||||| |||||||    
T  9753920 agaaagtaatcattacttaaaagtgaag--gtttcaaaataattaacaaggacaattcagtaaaaatatcattatctttctttcatctttacacttttct 9754017  T
Q  113 taa 115  Q
    |||    
T  9754018 taa 9754020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 13243696 - 13243596
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataa-tgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttct 112  Q
    |||||||||||||||||||||| ||  || |||||||||||| | |||||||||| ||||||||| ||||| | ||||||||| |||||||| |||||||    
T  13243696 agaaaataatcattacttaaaaatg--aaggtttcaaaataattaacaaggacaattcagtaaaaatatcattatctttcttttatctttacacttttct 13243599  T
Q  113 taa 115  Q
    |||    
T  13243598 taa 13243596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 11147807 - 11147900
Alignment:
Q  20 taatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||| |||| |||||||||||   |||| |||||||| | |||| ||| ||||||||| ||||| | |||| ||||||||||||| ||||||||||    
T  11147807 taattattatttaaaagtgaag--gtttaaaaataataataagggcaattcagtaaaaatatcattctcttcctttcatctttacacttttcttaa 11147900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 10743 - 10642
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  10743 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 10644  T
Q  114 aa 115  Q
    ||    
T  10643 aa 10642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 29194138 - 29194239
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  29194138 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 29194237  T
Q  114 aa 115  Q
    ||    
T  29194238 aa 29194239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 2110376 - 2110471
Alignment:
Q  20 taatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  2110376 taatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttcttaa 2110471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 28585833 - 28585732
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  28585833 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttttatctttacacttttctt 28585734  T
Q  114 aa 115  Q
    ||    
T  28585733 aa 28585732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 4828239 - 4828138
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||| ||||||||    
T  4828239 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctttttcttttatctttacacttttctt 4828140  T
Q  114 aa 115  Q
    ||    
T  4828139 aa 4828138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 43370824 - 43370925
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||| ||||||||    
T  43370824 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttttatttttacacttttctt 43370923  T
Q  114 aa 115  Q
    ||    
T  43370924 aa 43370925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 45080568 - 45080469
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  45080568 agaaaataatcattacttaaaagtgaaaaagtttcaacataatgataagggcaactcagtaaaagtatcac--tctttctttcatctttacacttttctt 45080471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 1779222 - 1779121
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| | |||||||||||||||||| ||||||||    
T  1779222 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaattcagtaaaaatatcattatctttctttcatctttacacttttctt 1779123  T
Q  114 aa 115  Q
    ||    
T  1779122 aa 1779121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 8381466 - 8381365
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||  |||||||    
T  8381466 agaaagtaatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctatttctttcatctttacatttttctt 8381367  T
Q  114 aa 115  Q
    ||    
T  8381366 aa 8381365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 9370524 - 9370625
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||| |||||||||||| ||||||||    
T  9370524 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaattcagtaaaaaaatcattttctttttttcatctttacacttttctt 9370623  T
Q  114 aa 115  Q
    ||    
T  9370624 aa 9370625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 43377356 - 43377257
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||   ||||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||    
T  43377356 agaaagtaatcattacttaaaagtgaag--gtttcaaaataataacaagtacaattcagtaaaagtatcattttctttctttcatctttacacttttctt 43377259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 16970306 - 16970405
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||  || |||| |||||||| | |||| ||| ||||||||| ||||| | ||||||||| |||||||| ||||||||    
T  16970306 agaaagtaatcattacttaaaagtg--aaggtttaaaaataataataagggcaattcagtaaaaatatcattatctttcttttatctttacacttttctt 16970403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 30422588 - 30422643
Alignment:
Q  60 aaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||| ||||||||||||||||||||| ||||||||||||| |||| ||||||||||    
T  30422588 aagggcaactcagtaaaagtatcactctctttctttcatcgttacacttttcttaa 30422643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 42847057 - 42846990
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatca 83  Q
    ||||||||||||||||||||||||||| |  |||||||||||| |||||||||| | ||||||| |||||    
T  42847057 agaaaataatcattacttaaaagtgaaga--tttcaaaataataacaaggacaatttagtaaaaatatca 42846990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 31921763 - 31921670
Alignment:
Q  20 taatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||| |||| |||||||||||   |||| |||||||| | |||| ||| | ||||||| ||||||| |||||||||||||||||| ||||||||||    
T  31921763 taattattatttaaaagtgaag--gtttaaaaataataataagggcaatttagtaaaaatatcactctctttctttcatctttacacttttcttaa 31921670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 25898766 - 25898832
Alignment:
Q  49 aaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||||||| | |||| ||| ||||||||| ||||||||| |||||||||||||||| || |||||||    
T  25898766 aaaataataataagggcaattcagtaaaaatatcactttttttctttcatctttacactcttcttaa 25898832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 39646426 - 39646366
Alignment:
Q  44 gtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttac 104  Q
    ||||||||||||| |||||| ||| ||||||||| ||||| | |||||||||||| |||||    
T  39646426 gtttcaaaataataacaagggcaattcagtaaaaatatcattctctttctttcatttttac 39646366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 37064903 - 37064756
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  37064903 agaaagtaatcattacttaaaagtgaaaaagtttcaaaaaaatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 37064804  T
Q  114 ----------aaatgatcaaataggtcacttattcaaggacggatgga 151  Q
              |||||||||||||||||||||||||| |||||||||||    
T  37064803 aatctatgtgaaatgatcaaataggtcacttattcagggacggatgga 37064756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 39788143 - 39788244
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  39788143 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 39788242  T
Q  114 aa 115  Q
    ||    
T  39788243 aa 39788244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 925286 - 925185
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  925286 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactttatttcttttatctttacacttttctt 925187  T
Q  114 aa 115  Q
    ||    
T  925186 aa 925185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 17493903 - 17494004
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  17493903 agaaaataattattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaataaaagtatcactctctttctttcatctttacacttttctt 17494002  T
Q  114 aa 115  Q
    ||    
T  17494003 aa 17494004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 20789823 - 20789923
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||||||    
T  20789823 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagg-cagctcagtaaaagtatcactctctttctttcatctttacacttttctt 20789921  T
Q  114 aa 115  Q
    ||    
T  20789922 aa 20789923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 40071599 - 40071498
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  40071599 agaaagtaatcattgcttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 40071500  T
Q  114 aa 115  Q
    ||    
T  40071499 aa 40071498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 54438307 - 54438206
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  54438307 agaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 54438208  T
Q  114 aa 115  Q
    ||    
T  54438207 aa 54438206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 34408807 - 34408710
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||| ||||||    
T  34408807 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaataaaagtatcattctctttctttcatctttacacttttc 34408710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 47199636 - 47199737
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||| ||||||||    
T  47199636 agaaaataatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcaataaaaatatcactctctttctttcatctttacacttttctt 47199735  T
Q  114 aa 115  Q
    ||    
T  47199736 aa 47199737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 33800933 - 33800835
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttct 112  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  33800933 agaaagtaatcattatttaaaagtgaaaaagtttcaaaatgatgacaagggcaactcagtaaaagtatcactctctttcttccatctttacacttttct 33800835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 32218087 - 32217986
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| | | |||||||||||||||||| || |||||    
T  32218087 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggactattcagtaaaaatataattctctttctttcatctttacactcttctt 32217988  T
Q  114 aa 115  Q
    ||    
T  32217987 aa 32217986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 51744659 - 51744568
Alignment:
Q  24 cattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||||  ||||||||| ||||||||||    
T  51744659 cattacttaaaagtgaacaagtttcaaaataatgacaagggcaacttagtaaaagtatcactctctttctcacatctttacacttttcttaa 51744568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 52101198 - 52101299
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||  ||| ||||||||| ||||| | | |||||||||||||||| ||||||||    
T  52101198 agaaaataaccattacttaaaagtgaaaaaatttcaaaataatgacaagtgcaattcagtaaaaatatcattatatttctttcatctttacacttttctt 52101297  T
Q  114 aa 115  Q
    ||    
T  52101298 aa 52101299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 53509792 - 53509695
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttc 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| | ||||| | | |||||||||||||||| ||||||    
T  53509792 agaaaataatcattatttaaaagtgaaaaagtttcaaaataatgacaatgacaattcagtaacaatatcattctttttctttcatctttacacttttc 53509695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 21240476 - 21240577
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||||| | ||| ||||||||| ||||| | |||||||||||||| ||| ||||||||    
T  21240476 agaaagtaatcattacttaaaaatgaaaaagtttcaaaatagtgacaatgtcaattcagtaaaaatatcattctctttctttcatctctacacttttctt 21240575  T
Q  114 aa 115  Q
    ||    
T  21240576 aa 21240577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 28910306 - 28910207
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||   ||||||||||||| |||||||||| ||||||||| ||||| | |||||||||||||||| |  |||||||    
T  28910306 agaaagtaatcattacttaaaagtgaag--gtttcaaaataataacaaggacaattcagtaaaaatatcattctctttctttcatctttgcatttttctt 28910209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 3172169 - 3172069
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatga-caaggacaactcagtaaaagtatcactttctttctttcatctttactcttttct 112  Q
    ||||| |||||||||||||||||||||   ||||||||||||| | ||||||||| ||||||||| ||||| | ||||| ||||||||||||  ||||||    
T  3172169 agaaagtaatcattacttaaaagtgaag--gtttcaaaataattaacaaggacaattcagtaaaaatatcattatctttttttcatctttacatttttct 3172072  T
Q  113 taa 115  Q
    |||    
T  3172071 taa 3172069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 46870765 - 46870840
Alignment:
Q  22 atcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatc 99  Q
    |||||||||||||||||||   ||||||||||||| |||||||| | ||||||||| ||||| | |||||||||||||    
T  46870765 atcattacttaaaagtgaag--gtttcaaaataataacaaggactattcagtaaaaatatcattctctttctttcatc 46870840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 69903 - 70004
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  69903 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaattatcactctctttctttcatctttacacttttctt 70002  T
Q  114 aa 115  Q
    ||    
T  70003 aa 70004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 4041097 - 4041198
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  4041097 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactccctttctttcatctttacacttttctt 4041196  T
Q  114 aa 115  Q
    ||    
T  4041197 aa 4041198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 27596236 - 27596135
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  27596236 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacccagtaaaagtatcactctctttctttcatctttacacttttctt 27596137  T
Q  114 aa 115  Q
    ||    
T  27596136 aa 27596135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 6392421 - 6392522
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  6392421 agaaattaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacttagtaaaagtatcactctctttctttcatctttacacttttctt 6392520  T
Q  114 aa 115  Q
    ||    
T  6392521 aa 6392522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 40232265 - 40232164
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  40232265 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttttatctttacacttttctt 40232166  T
Q  114 aa 115  Q
    ||    
T  40232165 aa 40232164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 25943797 - 25943656
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||  |||||||    
T  25943797 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaatggcaattcagtaaaagtatcactctctttctttcatctttacaattttctt 25943698  T
Q  114 --------aaatgatcaaataggtcacttattcaaggacgga 147  Q
            |||||||||||||||||||||||||| |||||||    
T  25943697 aatctgtgaaatgatcaaataggtcacttattcagggacgga 25943656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 29737555 - 29737656
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||| ||||||||    
T  29737555 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttttatttttacacttttctt 29737654  T
Q  114 aa 115  Q
    ||    
T  29737655 aa 29737656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 31689503 - 31689402
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  31689503 agaaagtaatcattttttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 31689404  T
Q  114 aa 115  Q
    ||    
T  31689403 aa 31689402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 38276695 - 38276594
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||  |||| | |||||||||||||||||||||||||||    
T  38276695 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaacatcattctctttctttcatctttactcttttctt 38276596  T
Q  114 aa 115  Q
    ||    
T  38276595 aa 38276594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 41427798 - 41427697
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| ||| |||||||||||||||||| ||||| ||    
T  41427798 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcaataaaagtattactctctttctttcatctttacacttttttt 41427699  T
Q  114 aa 115  Q
    ||    
T  41427698 aa 41427697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 24300294 - 24300203
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| ||||||||||||||||||||||||||||          |||||| ||||||||||||||||||||| ||||||||||||||| || ||||||||    
T  24300294 agaaagtaatcattacttaaaagtgaaaaagttt----------acaagggcaactcagtaaaagtatcactctctttctttcatcttcacacttttctt 24300205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 48838210 - 48838296
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatcttt 102  Q
    ||||| ||||||||||||||||||||||  |||| |||||||| |||||||||| | ||||||| ||||| ||||||||||| ||||||    
T  48838210 agaaagtaatcattacttaaaagtgaaa--gttttaaaataataacaaggacaatttagtaaaaatatcattttctttcttttatcttt 48838296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 21442948 - 21442849
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| ||| ||||||||||||||||||  ||||||||||||| |||||| ||| | ||||||| ||||| | | ||| |||||||||||| ||||||||    
T  21442948 agaaagtaaccattacttaaaagtgaaa--gtttcaaaataataacaagggcaatttagtaaaaatatcattctatttttttcatctttacacttttctt 21442851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 22338126 - 22338219
Alignment:
Q  20 taatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||| |||| |||||||||||   |||| |||||||| | |||| ||| ||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  22338126 taattattatttaaaagtgaag--gtttaaaaataataataagggcaattcagtaaaaatatcactctctttctttcatctttacacttttcttaa 22338219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 22619908 - 22620001
Alignment:
Q  20 taatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||| |||| |||||||||||   |||| |||||||| | || | ||| ||| ||||| ||||||| |||||||||||||||||| ||||||||||    
T  22619908 taattattatttaaaagtgaag--gtttaaaaataataataaaggcaattcaataaaaatatcactctctttctttcatctttacacttttcttaa 22620001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 42897524 - 42897423
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  42897524 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 42897425  T
Q  114 aa 115  Q
    ||    
T  42897424 aa 42897423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 36982338 - 36982437
Alignment:
Q  16 aaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||    
T  36982338 aaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctttttctttcatctttacacttttcttaa 36982437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 14044212 - 14044348
Alignment:
Q  20 taatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt------ 113  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||| ||||||||          
T  14044212 taatcattatttaaaagtgaaaaagtttcaaaataatgacaagggcaacttagt-aaagtatcactctctttctttcatctttacacttttcttaatacg 14044310  T
Q  114 ----aaatgatcaaataggtcacttattcaaggacgga 147  Q
        |||||||||||||||||||||||||| |||||||    
T  14044311 tgtgaaatgatcaaataggtcacttattcagggacgga 14044348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 2970815 - 2970715
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatga-caaggacaactcagtaaaagtatcactttctttctttcatctttactcttttct 112  Q
    ||||| |||||||||||||||||||||   ||||||||||||| | ||||| ||| ||||| ||| ||||| | ||||||||||||||||||  ||||||    
T  2970815 agaaagtaatcattacttaaaagtgaag--gtttcaaaataattaacaagggcaattcagtgaaaatatcattatctttctttcatctttacatttttct 2970718  T
Q  113 taa 115  Q
    |||    
T  2970717 taa 2970715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 36768024 - 36767936
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttac 104  Q
    ||||| ||||||||| |||||||||||   |||| |||||||| | |||| ||| ||||||||| ||||||| ||||||||||||||||||    
T  36768024 agaaagtaatcattatttaaaagtgaag--gtttaaaaataataataagggcaattcagtaaaaatatcactctctttctttcatctttac 36767936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 33404387 - 33404480
Alignment:
Q  20 taatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||| |||| ||||||||  ||| |||| |||||||| | |||| ||| ||||||||| ||||||| ||||||||||||||||||  |||||||||    
T  33404387 taattattatttaaaagt--aaaggtttaaaaataataataagggcaattcagtaaaaatatcactctctttctttcatctttacatttttcttaa 33404480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 5712600 - 5712667
Alignment:
Q  48 caaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    ||||||||| | |||| ||| |||| |||| ||||||||||||||||||||||||||  |||||||||    
T  5712600 caaaataataataagggcaattcagaaaaaatatcactttctttctttcatctttacatttttcttaa 5712667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 38321795 - 38321896
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  38321795 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttcatctttacacttttctt 38321894  T
Q  114 aa 115  Q
    ||    
T  38321895 aa 38321896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 50777147 - 50777248
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  50777147 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttcttttatctttacacttttctt 50777246  T
Q  114 aa 115  Q
    ||    
T  50777247 aa 50777248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 1929365 - 1929266
Alignment:
Q  16 aaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||    
T  1929365 aaaaaaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctttttctttcatctttacacttttcttaa 1929266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 32045983 - 32046084
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  32045983 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataacgacaagggcaactcggtaaaagtatcactttctttctttcatttttacacttttctt 32046082  T
Q  114 aa 115  Q
    ||    
T  32046083 aa 32046084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 46862706 - 46862807
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||    
T  46862706 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaggaaaagtatcactctctttcttttatctttacacttttctt 46862805  T
Q  114 aa 115  Q
    ||    
T  46862806 aa 46862807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 39151047 - 39150946
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| ||||||||  |||||||    
T  39151047 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcattctctttcttttatctttacatttttctt 39150948  T
Q  114 aa 115  Q
    ||    
T  39150947 aa 39150946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 28036851 - 28036749
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagt-aaaagtatcactttctttctttcatctttactcttttct 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||| |||||||| |||||||    
T  28036851 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaaaatatcactctctttcttttatctttacacttttct 28036752  T
Q  113 taa 115  Q
    |||    
T  28036751 taa 28036749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 1207601 - 1207501
Alignment:
Q  15 gaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctta 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| | |||||||||||||| ||| |||||||||    
T  1207601 gaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattatctttctttcatctctacacttttctta 1207502  T
Q  115 a 115  Q
    |    
T  1207501 a 1207501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 8229213 - 8229315
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcact-ttctttctttcatctttactcttttct 112  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| || ||| |||||||||||| |||||||    
T  8229213 agaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaaatatcactcttttttttttcatctttacacttttct 8229312  T
Q  113 taa 115  Q
    |||    
T  8229313 taa 8229315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 46371094 - 46371172
Alignment:
Q  37 tgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||||||||    
T  46371094 tgaaaaagtttcaaaataatgacaagggcaattcagtaaaagtatcactctctttctttcatctttacacttttcttaa 46371172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 40562584 - 40562485
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| ||||||||||||||||||  ||||||||||||||||| |||||| ||| ||||||||| ||||| | |||||||||||||||||| ||||||||    
T  40562584 agaaagtaatcattacttaaaagt--aaaagtttcaaaataataacaagggcaattcagtaaaaatatcattctctttctttcatctttacacttttctt 40562487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 9129552 - 9129450
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaa---agtatcactttctttctttcatctttactctttt 110  Q
    ||||| |||||||||||||||||||  ||||||| |||||||| |||||||||| | ||||||   | ||||| | ||||||||| |||||||| |||||    
T  9129552 agaaagtaatcattacttaaaagtg--aaagtttaaaaataataacaaggacaattgagtaaaaatattatcattctctttcttttatctttacactttt 9129455  T
Q  111 cttaa 115  Q
     ||||    
T  9129454 gttaa 9129450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 28541735 - 28541636
Alignment:
Q  16 aaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| ||||||||||    
T  28541735 aaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacccagtaaaagtatcactctctttctttcatctttacacttttcttaa 28541636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 12350422 - 12350523
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  12350422 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagcatcactctctttctttcatctttacacttttctt 12350521  T
Q  114 aa 115  Q
    ||    
T  12350522 aa 12350523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 29182741 - 29182842
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||  |||||||    
T  29182741 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaaatatcactctctttctttcatctttacatttttctt 29182840  T
Q  114 aa 115  Q
    ||    
T  29182841 aa 29182842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 30736560 - 30736670
Alignment:
Q  5 gaggagcagagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttac 104  Q
    ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||||    
T  30736560 gaggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaattcagtaaaaatatcattctctttctttcatctttac 30736659  T
Q  105 tcttttcttaa 115  Q
     ||||||||||    
T  30736660 acttttcttaa 30736670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 1241259 - 1241359
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||  |||||||    
T  1241259 agaaagtaatcattacttaaaa-tgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactttctttctttcatttttacatttttctt 1241357  T
Q  114 aa 115  Q
    ||    
T  1241358 aa 1241359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 16435929 - 16436026
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||| ||||||||    
T  16435929 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatca----ctttctttcatctttacacttttctt 16436024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 7271228 - 7271127
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| | | |||||||||||||||| ||||||||    
T  7271228 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattctatttctttcatctttacacttttctt 7271129  T
Q  114 aa 115  Q
    ||    
T  7271128 aa 7271127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 31013645 - 31013544
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||| | |||||||||| | ||||| ||||||||    
T  31013645 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgataagggcaattcagtaaaaatatcattatctttctttcgtttttacacttttctt 31013546  T
Q  114 aa 115  Q
    ||    
T  31013545 aa 31013544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 13042122 - 13042217
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactctttt 110  Q
    |||||||||||||||||||||||||||||  ||| ||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||    
T  13042122 agaaaataatcattacttaaaagtgaaaattttttaaa-taatgacaagggcaactcagtaaaaatatcactctctttctttcatctttacactttt 13042217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 31833736 - 31833640
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    |||||||||||||||||||||| ||||   |||||||||||||   |||| ||| | ||||||| ||||| | | |||||||||||||||| ||||||||    
T  31833736 agaaaataatcattacttaaaaatgaag--gtttcaaaataat---aagggcaatttagtaaaaatatcattatttttctttcatctttacacttttctt 31833642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 1870684 - 1870780
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttct 112  Q
    ||||| |||||||||||||||||||||   | ||||||||||| |||||| ||| | ||||||| ||||| |  ||||||||||||||||  |||||||    
T  1870684 agaaagtaatcattacttaaaagtgaag--gcttcaaaataataacaagggcaatttagtaaaaatatcattccctttctttcatctttatacttttct 1870780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 13210506 - 13210592
Alignment:
Q  26 ttacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttcttaa 115  Q
    ||||||||||||||||  ||||||||||| | |||||| | | |||||||||  |||| | |||||||||||||||||| ||||||||||    
T  13210506 ttacttaaaagtgaaa--gtttcaaaata-taacaagggcgattcagtaaaataatcattctctttctttcatctttacacttttcttaa 13210592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 92319 - 92218
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  92319 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtgtcactctctttctttcatctttacacttttctt 92220  T
Q  114 aa 115  Q
    ||    
T  92219 aa 92218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 10167 - 10066
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||| |||||||| ||||||||    
T  10167 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataataacaagggcaactcagtaaaaatatcactctctttcttttatctttacacttttctt 10068  T
Q  114 aa 115  Q
    ||    
T  10067 aa 10066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 3964 - 4065
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttactcttttctt 113  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||| | || | ||| |||||||||||| ||||||||    
T  3964 agaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggtaactcagtaaaagtagcgctctttttttttcatctttacccttttctt 4063  T
Q  114 aa 115  Q
    ||    
T  4064 aa 4065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 16507 - 16554
Alignment:
Q  14 agaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 61  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16507 agaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 16554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 1127 - 1208
Alignment:
Q  21 aatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactttctttctttcatctttac 104  Q
    ||||||||||||||||||||   ||||||||||||| |||||  ||| ||||||||| ||||| | ||||||||||||||||||    
T  1127 aatcattacttaaaagtgaag--gtttcaaaataataacaagagcaattcagtaaaaatatcattctctttctttcatctttac 1208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University