View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3508_high_6 (Length: 393)
Name: NF3508_high_6
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 43 - 350
Target Start/End: Original strand, 5715669 - 5715976
Alignment:
| Q |
43 |
tctcttttctcttctattggtgttgagtttcttgttttattacattttgttttgatgtctttatgacaataatggactcaatgattgaaaagtcttcaat |
142 |
Q |
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| T |
5715669 |
tctcttttctcttctgttggtgttgagcttcttgttttattacattttgttttgaagtctttatgacaataatggactcaatgattgaaaagtcttcaat |
5715768 |
T |
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| Q |
143 |
ggtttttgtcaataatgagaataatggttgagaagcttgtaatggtgtttggctgaaataggtgtgggcacagattcatgataaactatttttagaaaat |
242 |
Q |
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| T |
5715769 |
ggtttttgtcaataatgagaataatgattgagaagcttgtaattgtgtttggctgaaataggtgtgggcacagattcatgataaactatttttagaaaat |
5715868 |
T |
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| Q |
243 |
aatatctttccacaaaatctcaagagggtttaaatatctctttcaaattcnnnnnnncattaaattattgaaaatttgaataattgttacacttgttgag |
342 |
Q |
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| T |
5715869 |
aatatctttccacaaaatctcaagagggtttaaatatctctttcaaattcaaaaaatcgttaaattattgaaaatttgaataattgttacacttgttgag |
5715968 |
T |
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| Q |
343 |
aaccactt |
350 |
Q |
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| T |
5715969 |
aaccactt |
5715976 |
T |
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