View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3508_high_9 (Length: 323)
Name: NF3508_high_9
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 7775998 - 7776119
Alignment:
| Q |
17 |
tatggcaatcaaaacttaattaaataattaatctaacataaatgattgtaattgagacggacacgacttaaaatgcatcagctatcaacaatttgtgaca |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7775998 |
tatggcaatcacaacttaattaaataattaatctaacataaatgattgtaattgagacggacacgacttaaaatgcatcagctatcaacaatttgtgaca |
7776097 |
T |
|
| Q |
117 |
tttatgtatgtgttgaattcat |
138 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7776098 |
tttatgtatgtgttgaattcat |
7776119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 7776135 - 7776239
Alignment:
| Q |
120 |
atgtatgtgttgaattcatgtagtagatctgaaataaacagaacatataatcgggt--ttat-----aatgcgagttttatatatcgattagcaatattc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7776135 |
atgtatgtgttgaattcatgtagtagatctgaaataaacagaacatataatcgatttattattagcaaatgcgagttttatatatcgattagcaatattc |
7776234 |
T |
|
| Q |
213 |
attaa |
217 |
Q |
| |
|
||||| |
|
|
| T |
7776235 |
attaa |
7776239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University