View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3508_low_1 (Length: 836)
Name: NF3508_low_1
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_low_1 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 16 - 752
Target Start/End: Complemental strand, 32794109 - 32793368
Alignment:
| Q |
16 |
caaaaagttatccaagaaatttataactttcttagttttagtttt------tgtttatgtgtcgtggactcgtggtgaggttgcgtggtctgtagccatc |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
32794109 |
caaaaagttatccaagaaatttataactttcttagttttagttttagtttttgtttatgtgtcgtggactcgtgttgaagttgcgtggtctgtagccatt |
32794010 |
T |
|
| Q |
110 |
ggtaattccacacatgcgtcacatatattaacgtagt--ttttttttaagtggtcagtacattgtannnnnnnnnnnaatgttttggatttcgtttttgg |
207 |
Q |
| |
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||||||| |||||||| |||||||||||||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||||||||| |
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| T |
32794009 |
ggtaatttcacacatgtgtcacatatattaacggagtacttttttttaagtgctctgtacattgtatttttttttt-aatgttttggatttcgtttttgg |
32793911 |
T |
|
| Q |
208 |
aattggaggtgaaggtggtgattcgtttctatttcttcttgcattgggatgatatttgttcatgtgtcacggtgatgtcgtgtagtatgtgaccgaaggt |
307 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |
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| T |
32793910 |
aattagaggtgaaggtggtgattcgtttctatttcttcttgcattgggatgatatttgt--atgtgtcacggtgatgtcgtgtagtatgtggccgacagt |
32793813 |
T |
|
| Q |
308 |
aataccgtccaagcgtcacatatattaatgtagtattttcgtagttttaccgttgtaatgttttatgaatttgttgttggtcgtaacatttaatttggtc |
407 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32793812 |
aataccatccaagcgtcagatatattaatgtagtattttcatagttttaccgttgtaatgttttatgaatttgttgttggtcgtaacatttaatttggtc |
32793713 |
T |
|
| Q |
408 |
atcatgatcaaattaatcctcaagtgtattcgttgtttatttatgtatgtgaaaattaatcctaacgttgttgataatcgatcaaatgtattggatgcat |
507 |
Q |
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| T |
32793712 |
atcatgatcaaattagtcctcaattgtattcgttgtttatttatgtaagtgaaaattaatcctaacgttgttgataatcgatcaaatgtattggatgcat |
32793613 |
T |
|
| Q |
508 |
ggttgaattttgtgataatgcaatgtcaaacctaccgttggatttcacgtttgaaatagagaattgatgcaagaatactttgtagaagattttaaagttt |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32793612 |
ggttgaattttgtgataatgcaatgtcaaacctagtgttgaatttcacgtttgaaatagagaattgatgcaagaataatttgtagaagattttaaagttt |
32793513 |
T |
|
| Q |
608 |
tagtgttctacgcttttgtgcccgtgtggtgtccacatcgttcaatatgtgttgtgtcgtcggctgttacgcacataatattaatttttgaatgatgtgt |
707 |
Q |
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| T |
32793512 |
tagtgttctacgcttttgtgcccgtgtggtgtccacatcgttcaatatgtgttgtgtcgtcggctgttacgcacgtaatattaatttttgaatgatgtgt |
32793413 |
T |
|
| Q |
708 |
catgtaaaatgtcgacgaagtgtagtcaaatatcgaccattttcc |
752 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||| |||||| |
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| T |
32793412 |
catgtagaatgtcgacgacgtgtagtcaaatatcgaccgttttcc |
32793368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 766 - 822
Target Start/End: Complemental strand, 32790853 - 32790797
Alignment:
| Q |
766 |
aactcgtctgagccggggtttgacacaattctgatagaccaatcaactttcttttga |
822 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32790853 |
aactcgtctgagccggggtttgacacaattctgatagaccaatcaactttcttttga |
32790797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 555 - 761
Target Start/End: Original strand, 55031556 - 55031760
Alignment:
| Q |
555 |
cgtttgaaata-gagaattgatgcaagaatactttgtagaagattttaaagttttagtgttctacgcttttgtgcccgtgtggtgtccacatcgttcaat |
653 |
Q |
| |
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||||||||||| ||||||||||||||||||| | |||||| |||| |||||||| | ||||||| ||||||| ||||||||| |||||||||| | |
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| T |
55031556 |
cgtttgaaatacgagaattgatgcaagaatattcagtagaaatttttgaagttttaatattctacg-ttttgtggttgtgtggtgtgcacatcgttcggt |
55031654 |
T |
|
| Q |
654 |
atgtgttgtgtcgtcggctgttacgcacataatattaatttttgaatgatgtgtcatgtaaaatgtcgacgaagtgtagtcaaatatcgaccattttcca |
753 |
Q |
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||||| |||||| |||| | | |||| || ||||||||| ||| | |||||||||||| ||||| |||| ||||||||||| || | | ||||||| |
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| T |
55031655 |
atgtggcctgtcgtaggctataatgcacgta-tattaatttgtga-tcatgtgtcatgtataatgtgtacgatatgtagtcaaatgtcaatcgttttcca |
55031752 |
T |
|
| Q |
754 |
cccgtgcg |
761 |
Q |
| |
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|||||||| |
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| T |
55031753 |
cccgtgcg |
55031760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 32794267 - 32794233
Alignment:
| Q |
25 |
atccaagaaatttataactttcttagttttagttt |
59 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |
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| T |
32794267 |
atccaagaaatttatatctttcttagttttagttt |
32794233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 554 - 649
Target Start/End: Complemental strand, 38940655 - 38940560
Alignment:
| Q |
554 |
acgtttgaaatagagaattgatgcaagaatactttgtagaagattttaaagttttagtgttctacgcttttgtgcccgtgtggtgtccacatcgtt |
649 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| || |||||||||| ||||||||| |
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| T |
38940655 |
acgtatgaaatagagaattgatgcaagaatattttgtagatgattttaaagttttagtgttcttagcttttatgttcgtgtggtgtgcacatcgtt |
38940560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 623
Target Start/End: Complemental strand, 42381905 - 42381830
Alignment:
| Q |
548 |
gatttcacgtttgaaatagagaattgatgcaagaatactttgtagaagattttaaagttttagtgttctacgcttt |
623 |
Q |
| |
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|||| |||| |||||||||||||| ||||||| |||| | ||||||| |||| |||||||||| |||||| |||| |
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| T |
42381905 |
gattacacgattgaaatagagaatagatgcaaaaatattatgtagaaattttttaagttttagtattctacacttt |
42381830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 559 - 674
Target Start/End: Complemental strand, 52017239 - 52017124
Alignment:
| Q |
559 |
tgaaatagagaattgatgcaagaatactttgtagaagattttaaagttttagtgttctacgcttttgtgcccgtgtggtgtccacatcgttcaatatgtg |
658 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| || |||||||||| ||||||||| |||||| |
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| T |
52017239 |
tgaaatagagaattgatgcaagaatattttgtagatgattttaaagttttagtgttcttagcttttatgttcgtgtggtgtgcacatcgtttggtatgtg |
52017140 |
T |
|
| Q |
659 |
ttgtgtcgtcggctgt |
674 |
Q |
| |
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| |||||||| |||| |
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| T |
52017139 |
tcatgtcgtcgactgt |
52017124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 761
Target Start/End: Original strand, 37523618 - 37523837
Alignment:
| Q |
540 |
taccgttggatttcacgtttgaaata-gagaattgatgcaagaatactttgtagaagattttaaagttttagtgttctacgcttttgtgcccgtgtggtg |
638 |
Q |
| |
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|||||||||||| || |||| ||||| ||||||||||||||||||| || ||| || |||| | ||||||||||| ||| ||||||| | |||||||| |
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| T |
37523618 |
taccgttggattacaagtttaaaatatgagaattgatgcaagaatatttcgtataaatttttttaattttagtgttccacg-ttttgtgtctgtgtggtg |
37523716 |
T |
|
| Q |
639 |
tccacatcgttcaatatgtgttgtgtcgtcggctgttacgcacataatattaatttttgaatgatgtgtcatgtaaaatgtcgacgaagtgtagtcaaat |
738 |
Q |
| |
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| ||||||||| |||||| | |||||| ||| | |||| | ||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||| |
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| T |
37523717 |
tgaacatcgttctgtatgtggtccgtcgtcagctatattgcacgtg-tattaatttgtgatt-atgtgtcatgtagaatgtggacgacgtgtagtcaaaa |
37523814 |
T |
|
| Q |
739 |
atcgaccattttccacccgtgcg |
761 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
37523815 |
gtcgaccgttttccacccgtgcg |
37523837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 548 - 623
Target Start/End: Complemental strand, 79601 - 79526
Alignment:
| Q |
548 |
gatttcacgtttgaaatagagaattgatgcaagaatactttgtagaagattttaaagttttagtgttctacgcttt |
623 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| |||| | ||||||| |||| |||||||||| |||||| |||| |
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|
| T |
79601 |
gattacacgattgaaatagagaattgatgcaaaaatattatgtagaaattttttaagttttagtattctacacttt |
79526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 623
Target Start/End: Complemental strand, 1746990 - 1746915
Alignment:
| Q |
548 |
gatttcacgtttgaaatagagaattgatgcaagaatactttgtagaagattttaaagttttagtgttctacgcttt |
623 |
Q |
| |
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|||| |||| |||||||||||| ||||||||| |||| | ||||||| |||| |||||||||| |||||| |||| |
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| T |
1746990 |
gattacacgattgaaatagagagttgatgcaaaaatattatgtagaaattttttaagttttagtattctacacttt |
1746915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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