View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3508_low_12 (Length: 312)
Name: NF3508_low_12
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 41490957 - 41491165
Alignment:
| Q |
8 |
cgaataaaatagcagaagtaccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattatgtgaccatggtttaggattgttat |
107 |
Q |
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| T |
41490957 |
cgaacaaattagcagaagtaccacatacaaatacgcaagtagcgattcacagtttacatcatgttaagagaattatgtgaccgtggtttaggattgttat |
41491056 |
T |
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| Q |
108 |
tttgatttttgattgtgctctggaaggattatttataataactaaccaatcactgatgcatgtatttttggaaacaacaatagattatatcatcatataa |
207 |
Q |
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| T |
41491057 |
ttt-------gattgtgctctgaaaggattatttataataactaaccaatcaccgatgcatgtatttttggaaacaacaatagattatatcatcatataa |
41491149 |
T |
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| Q |
208 |
ccatgttaagaaatag |
223 |
Q |
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| T |
41491150 |
ccatgttaagaaatag |
41491165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 41486670 - 41486856
Alignment:
| Q |
26 |
taccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattatgtgaccatggtttaggattgttattttgatttttgattgtgc |
125 |
Q |
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| T |
41486670 |
taccacaaacaagtacgcaagtactgattcacggttcacatcatgttaagcgaattatgtgactatggtttaggattgttattttggttt-------tgc |
41486762 |
T |
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| Q |
126 |
tctggaaggattatttataataactaaccaatcactgat-gcatgtatttttggaaacaacaatagattatatcatcatataaccatgttaagaaata |
222 |
Q |
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| T |
41486763 |
tctggatggattgtttataataactaatcaatcattaatagcatgtatttttggaaa-aacaatagatt---ggatcatataaccatgtttagaaata |
41486856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 41488406 - 41488598
Alignment:
| Q |
20 |
cagaagtaccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattatgtgaccatggtttaggattgttattttgatttttga |
119 |
Q |
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| T |
41488406 |
cagaactaccacaaacaagtacgcaagtactgattcacggttcacatcatgttaagcgaattatgtgactatggtttaggattgttattttggttt---- |
41488501 |
T |
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| Q |
120 |
ttgtgctctggaaggattatttataataactaaccaatcactgat-gcatgtatttttggaaacaacaatagattatatcatcatataaccatgttaaga |
218 |
Q |
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| T |
41488502 |
---tgctatggatggattgtttataataactaatcaatcattaatagcatgtatttttggaaa-aacaatagatt---ggatcatataaccatgtttaga |
41488594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 41489247 - 41489413
Alignment:
| Q |
20 |
cagaagtaccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattatgtgaccatggtttaggattgttattttgatttttga |
119 |
Q |
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| T |
41489247 |
cagaactaccacaaacaagtacgcaagtactgattcacggttgacatcatgttaagcgaattatgtgactatggtttaggattgttattttggttt---- |
41489342 |
T |
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| Q |
120 |
ttgtgctctggaaggattatttataataactaaccaatcactgat-gcatgtatttttggaaacaacaatagatt |
193 |
Q |
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| T |
41489343 |
---tgctctggatgaattgtttataataactaatcaatcattaatagcatgtatttttggaaa-aacaatagatt |
41489413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 41487537 - 41487729
Alignment:
| Q |
20 |
cagaagtaccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattatgtgaccatggtttaggattgttattttgatttttga |
119 |
Q |
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| T |
41487537 |
cagaactaccacaaacaagtacgcaagtactgattcacggttgacatcatgttaagcgaattatatgactatggtttaggattgttattttggttt---- |
41487632 |
T |
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| Q |
120 |
ttgtgctctggaaggattatttataataactaaccaatcactgat-gcatgtatttttggaaacaacaatagattatatcatcatataaccatgttaaga |
218 |
Q |
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| T |
41487633 |
---tgctctgaatggattgtttataataactaatcaatcattaatagcatgtattttt-gaaaaaacaatagatt---ggatcatataaccatgtttaga |
41487725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 41490095 - 41490201
Alignment:
| Q |
8 |
cgaataaaatagcagaagtaccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattatgtgaccatggtttaggattgttat |
107 |
Q |
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| T |
41490095 |
cgaacaaattagcagaagtaccacaaaaaagtacacaagtaccgattcgcgattcacatcatgttaagagaattatgttaccatggtttaggatagttat |
41490194 |
T |
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| Q |
108 |
tttgatt |
114 |
Q |
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| T |
41490195 |
tttgatt |
41490201 |
T |
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