View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3508_low_14 (Length: 289)
Name: NF3508_low_14
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 32790349 - 32790516
Alignment:
| Q |
8 |
tcgagtgagatgaacacttgtatgtatatcaacatcgtgcaaaaagactggaaaattaaacaggtaaataagaaataacctgtcgcccttcggtttcctc |
107 |
Q |
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| T |
32790349 |
tcgactgacatgaacacttgtatgtatatcaacatcgtgcaaaaagactggaaaattaaacaggcaaataagaaataacctgtcgcccttcggtttcctc |
32790448 |
T |
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| Q |
108 |
atgcgatcgccattagctttggatacagcatcaatttcagctcgaatttgacgcatctaggattgtat |
175 |
Q |
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| T |
32790449 |
atgcgatcgccattagctttggatacagcaccaatttcagctcgaatttgacgcatctaggattgtat |
32790516 |
T |
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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 48283665 - 48283734
Alignment:
| Q |
46 |
gcaaaaagactggaaaattaaacaggtaaataagaaataacctgtcgcccttcggtttcctcatgcgatc |
115 |
Q |
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| T |
48283665 |
gcaaaaagactgggaaattaaacaagtaaataagaaataacctgtcgccctttggtttcctcatgcgatc |
48283734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 48284253 - 48284308
Alignment:
| Q |
117 |
ccattagctttggatacagcatcaatttcagctcgaatttgacgcatctaggattg |
172 |
Q |
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| T |
48284253 |
ccatcagctttggatacagcaccaatctctgctcgaatttgtcgcatctaggattg |
48284308 |
T |
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