View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3508_low_17 (Length: 283)
Name: NF3508_low_17
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 38482753 - 38482512
Alignment:
| Q |
21 |
gtaacactatacgaactaatatcgtgaataaatcctcaaatccaacaaccatcactatcttacatcacaatcggcaaaccgactttgcacccctttaaaa |
120 |
Q |
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| T |
38482753 |
gtaacattatatgaactaatatcgtgaataaatcctcaaatccaacaaccatcactatcttacatcacaatcggcaaaccgactttgcacccctttaaaa |
38482654 |
T |
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| Q |
121 |
acagaatcattaatatgacacttagatcactcaattaaaagacgttttcaatgaatacatgtaaattgatattagataatagatatcatcttcaaattag |
220 |
Q |
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| T |
38482653 |
acagaatcattaatacgacacttagatcactcaattaaaagacgttttcaatgaatacatgtaaattgatatta-------gatatcatcttcaaattag |
38482561 |
T |
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| Q |
221 |
attggagtttcgtcataagcctttaactctttcatgtccttagattatg |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38482560 |
attggagtttcgtcataagcctttaactctttcatgtccttagattatg |
38482512 |
T |
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