View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3508_low_2 (Length: 768)
Name: NF3508_low_2
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 174 - 761
Target Start/End: Original strand, 9498162 - 9498749
Alignment:
| Q |
174 |
caatactttgtaaacatgtgattggaagatgtattgatttttacaacaataatcacaagaacaagaaatctctcagtatgtcagacaattgacactactg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9498162 |
caatactttgtaaacatgtgattggaagatgtattgatttttacaacaataatctcaagaacaagaaatctttcagtatgtcagacaattgacactactg |
9498261 |
T |
|
| Q |
274 |
tgtttttgtgccagcatgcagctaggtatcttgccaatcaggaatgggtaaaaaatgattctctgaaaatagtggaaaatactgctgtaatacctcttct |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9498262 |
tgtttttgtgccagcatgcagctaggtatcttgccaatcaggaatgggtaaaaaatgattctctgaaaacagtggaaaatactgctgtaatacctcttct |
9498361 |
T |
|
| Q |
374 |
cttggctgttaattgtcatttcaagtcatgtagtctacaccactcattcctagtaataacatctgtatccttcttgtatagatacctattattatgctcg |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9498362 |
cttggctgttaattgtcatttcaagtcatgtagtctacaccactcattcctattaataacatctgtatccttcttgtatagatacctattattatgctcg |
9498461 |
T |
|
| Q |
474 |
tggtggaagtaccccaggatgttatcacttcatcagctcctacgttacattcattaaaagaagagtcacacagtacaactggtgaacatgttaatgactg |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9498462 |
tggtggaagtaccccaggatgttatcacttcatcagctcctacgttacattcattaaaagaagagtcacacagtacaactggtgaacatgttaatgacag |
9498561 |
T |
|
| Q |
574 |
tcattctgatattattcagttagaagattcagcattgttgaaaaggtctcaaactaatgtttatgctttgaaagattccaattctgttcgcgttgacatc |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9498562 |
tcattctgatattattcagttagaagattcagcattgttgaaaaggtctcaaactaatgtttatgctttgaaagattccaattctgttcgcgttgacatc |
9498661 |
T |
|
| Q |
674 |
agcttcaagtccccatcacatacaggactccaaactacaggaatggtaatatcttgtgactagggctttcaattttatatatattctt |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9498662 |
agcttcaagtccccatcacatacaggactccaaactacaggaatggtaatatcttgtgactagggctttcaattttatatattttctt |
9498749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 9498008 - 9498079
Alignment:
| Q |
20 |
atgatgatacattttgctttatcacttaatcacagtacattgtgtatgtgttattgatcttattaattgact |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9498008 |
atgatgatacattttgctttatcacttaatcacagtacattgtgtatgtgttatggatcttattaattgact |
9498079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University