View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3508_low_21 (Length: 239)

Name: NF3508_low_21
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3508_low_21
NF3508_low_21
[»] chr7 (20 HSPs)
chr7 (12-239)||(22879552-22879779)
chr7 (122-239)||(22813942-22814059)
chr7 (12-124)||(22814102-22814214)
chr7 (12-124)||(22839127-22839239)
chr7 (12-124)||(22804411-22804523)
chr7 (122-239)||(22829946-22830063)
chr7 (12-124)||(22888373-22888485)
chr7 (12-124)||(22893028-22893140)
chr7 (126-239)||(22888213-22888326)
chr7 (122-239)||(22808535-22808652)
chr7 (126-239)||(22874843-22874956)
chr7 (122-239)||(22892868-22892985)
chr7 (12-124)||(22875003-22875115)
chr7 (126-239)||(22804251-22804364)
chr7 (126-239)||(22838967-22839080)
chr7 (12-124)||(22808695-22808807)
chr7 (12-118)||(22830112-22830218)
chr7 (126-238)||(22897185-22897297)
chr7 (12-110)||(22912754-22912852)
chr7 (12-123)||(22897345-22897456)
[»] chr1 (2 HSPs)
chr1 (122-239)||(21151682-21151799)
chr1 (12-124)||(21151527-21151639)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 22879779 - 22879552
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879779 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaaaaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 22879680  T
Q  112 ctgaattcaatgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctga 211  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22879679 ctgaattcaatgcagatcctcacaaaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggcgactaaattttctga 22879580  T
Q  212 tatattttcttttggtgcatttcttctt 239  Q
    ||| ||||||||||||||||||||||||    
T  22879579 tatgttttcttttggtgcatttcttctt 22879552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 22814059 - 22813942
Alignment:
Q  122 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 221  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22814059 tgcagatcctcacacaactcatttggctggaacaattggttatcttgctcctgaacatattagaacaggtaaggccactaaattttctgatatgttttct 22813960  T
Q  222 tttggtgcatttcttctt 239  Q
    ||||||||||||||||||    
T  22813959 tttggtgcatttcttctt 22813942  T

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Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 22814214 - 22814102
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22814214 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttattagatt 22814115  T
Q  112 ctgaattcaatgc 124  Q
    ||||||| |||||    
T  22814114 ctgaatttaatgc 22814102  T

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Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 22839239 - 22839127
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22839239 atcatcaaaggtgttgcttcaggtttggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 22839140  T
Q  112 ctgaattcaatgc 124  Q
    ||||||| |||||    
T  22839139 ctgaatttaatgc 22839127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 22804523 - 22804411
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22804523 atcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 22804424  T
Q  112 ctgaattcaatgc 124  Q
    ||||||| |||||    
T  22804423 ctgaatttaatgc 22804411  T

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Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 22830063 - 22829946
Alignment:
Q  122 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| | ||||||    
T  22830063 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcctgaacatattagaacaggtaaggctacaaaattttctgatgtgttttct 22829964  T
Q  222 tttggtgcatttcttctt 239  Q
    ||||||||||||||||||    
T  22829963 tttggtgcatttcttctt 22829946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 22888485 - 22888373
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  22888485 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt 22888386  T
Q  112 ctgaattcaatgc 124  Q
    ||| ||| |||||    
T  22888385 ctggatttaatgc 22888373  T

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Target: chr7; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 22893140 - 22893028
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  22893140 atcatcaaaggtgttgcttcaggcgtggtttatcttcatgaagaatgggagaaagttgtaattcatagagacataaaagctagtaatgtgttgttagatt 22893041  T
Q  112 ctgaattcaatgc 124  Q
    ||||||| |||||    
T  22893040 ctgaatttaatgc 22893028  T

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Target: chr7; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 22888326 - 22888213
Alignment:
Q  126 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| | ||||||||||    
T  22888326 gatcctcacacaactcatttggctggaactattggttatcttgctcctgaacatattagaagaggtaaggctactaaattttctgatgtgttttcttttg 22888227  T
Q  226 gtgcatttcttctt 239  Q
    ||||||||||||||    
T  22888226 gtgcatttcttctt 22888213  T

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Target: chr7; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 22808652 - 22808535
Alignment:
Q  122 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 221  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||| | ||||||    
T  22808652 tgcagatcctcacacaactcatttggttggaactattggttatcttgcccctgagcatattagaacaggtaaggctactaaattttctgatgtgttttct 22808553  T
Q  222 tttggtgcatttcttctt 239  Q
    ||||||||||||||||||    
T  22808552 tttggtgcatttcttctt 22808535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 22874956 - 22874843
Alignment:
Q  126 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||||||||||||| | ||||||||||    
T  22874956 gatcctcacacaactcatttggctggaactattggttatcttgctccggaacatattagaactggtaaggctactaaattttctgatgtgttttcttttg 22874857  T
Q  226 gtgcatttcttctt 239  Q
    ||||||||||||||    
T  22874856 gtgcatttcttctt 22874843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 22892985 - 22892868
Alignment:
Q  122 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 221  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  22892985 tgcagatcatcacacgactcatttggctggaactattggttatcttgctccggaacatattagaacaggtaaggctactaaattttctgatgtgttttct 22892886  T
Q  222 tttggtgcatttcttctt 239  Q
    ||||||||||||||||||    
T  22892885 tttggtgcatttcttctt 22892868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 22875115 - 22875003
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||    
T  22875115 atcatcaaaggtgttgcttcaggtttggtttatctacatgaagaatgggaaaaagttgtgattcatagagacataaaagctagtaatgtgttgttagatt 22875016  T
Q  112 ctgaattcaatgc 124  Q
    ||||||| |||||    
T  22875015 ctgaatttaatgc 22875003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 22804364 - 22804251
Alignment:
Q  126 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 225  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  22804364 gatcctcacactactcatttggttggaacttttggttatcttgctcctgatcatattagaacaggtaaggctactaaattttctgatgtgttttcttttg 22804265  T
Q  226 gtgcatttcttctt 239  Q
    ||||||||||||||    
T  22804264 gtgcatttcttctt 22804251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 22839080 - 22838967
Alignment:
Q  126 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 225  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  22839080 gatcctcacactactcatttggttggaacttttggttatcttgctcctgatcatattagaacaggtaaggctactaaattttctgatgtgttttcttttg 22838981  T
Q  226 gtgcatttcttctt 239  Q
    ||||||||||||||    
T  22838980 gtgcatttcttctt 22838967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 22808807 - 22808695
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||||||    
T  22808807 atcatcaaaggtgttgcgtcaggtgtggtttatctacacgaagaatgggagaaagttgtaattcatcgagacataaaggctagtaatgtgttgttagatt 22808708  T
Q  112 ctgaattcaatgc 124  Q
    ||||||| |||||    
T  22808707 ctgaatttaatgc 22808695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 22830218 - 22830112
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    |||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  22830218 atcatcaaaggtattgcgtcaggtgtggtttatctacacgaagaatgggagaaagttgtgattcatagagacataaaggctagtaatgtgttgttagatt 22830119  T
Q  112 ctgaatt 118  Q
    |||||||    
T  22830118 ctgaatt 22830112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 22897297 - 22897185
Alignment:
Q  126 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 225  Q
    |||||||||||||||||||||| ||||||| | || ||||| || | |||||||| ||||||||||||||| ||||||||||||||| | ||||||||||    
T  22897297 gatcctcacacaactcatttggttggaactgtagggtatctagcacctgaacatactagaacaggtaaggctactaaattttctgatgtgttttcttttg 22897198  T
Q  226 gtgcatttcttct 238  Q
    |||||||||||||    
T  22897197 gtgcatttcttct 22897185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 22912852 - 22912754
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagat 110  Q
    ||||| |||||||||||||| ||| || ||||| | ||||||||||||||  |||||||||| ||||||||||| |||||||||||||| || ||||||    
T  22912852 atcattaaaggtgttgcttctggtttgttttatttacatgaagaatgggaacaagttgttattcatagagacattaaagctagtaatgttttattagat 22912754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 22897456 - 22897345
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    |||||||||||||||||||  ||| || ||||||| || |||||||||||| | ||||| || |||||||||||||| ||||| |||||||| ||||||     
T  22897456 atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg 22897357  T
Q  112 ctgaattcaatg 123  Q
     |||||| ||||    
T  22897356 gtgaattgaatg 22897345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 21151682 - 21151799
Alignment:
Q  122 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| ||||||| | ||||||    
T  21151682 tgcagatcctcacacaactcatttggctggaactattggttatcttgctccggaacatattagaacaggtaaggctactaaatcttctgatgtgttttct 21151781  T
Q  222 tttggtgcatttcttctt 239  Q
    ||||||||||||||||||    
T  21151782 tttggtgcatttcttctt 21151799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 21151527 - 21151639
Alignment:
Q  12 atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt 111  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  21151527 atcatcaaaggtgttgcttcaagtgtggtttatctacatgaagaatgggagaaagttgtaattcatagagacataaaagctagtaatgtgttgttagatt 21151626  T
Q  112 ctgaattcaatgc 124  Q
    ||||||| |||||    
T  21151627 ctgaatttaatgc 21151639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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