View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3508_low_3 (Length: 704)
Name: NF3508_low_3
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 598; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 9 - 691
Target Start/End: Original strand, 32568640 - 32569322
Alignment:
| Q |
9 |
agcagagatatttagaattaagagagaagctaaagttcttgctacttaccttatacatccacatgccaaaatctttcatttcagtgaacaatattctcca |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32568640 |
agcagagatatttagaattaagagagaagctaaagttcttgctacttaccttatacatccacatgccaaaatctttcatttcagtgaacaatattctcca |
32568739 |
T |
|
| Q |
109 |
agctcttgactcattaaaatcactggaaatttccttgagtcaagccaaatttaagcaagctgttgat---tgtgaagaagaaagcattcctgcttgcttt |
205 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32568740 |
agctcttgactcgttaaaatcactggaaatttccttgagtcaagccaaatttaagcaagctgttgatgattgtgaagaagaaagcattcctgcttgcttt |
32568839 |
T |
|
| Q |
206 |
ggaccatcaagtttggaaagaaatgattgccttcgcatactaagtttcctttccaactcaatttcgcttcctgattttaaagtgagacatcaagtggaaa |
305 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32568840 |
ggaccatcaagtttggaaagaaaggattgccttcacatactaagtttcctttccaagtcaatttcgcttcctgattttaaagtgagacatcaagtggaaa |
32568939 |
T |
|
| Q |
306 |
agttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttttagttattga |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32568940 |
agttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttttagttattga |
32569039 |
T |
|
| Q |
406 |
tgaagcagctatgctaaaagaatgtgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcagcttcctgca |
505 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
32569040 |
tgaagcagctatgctaaaagaatgcgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcaacttcctgca |
32569139 |
T |
|
| Q |
506 |
ttggtaaaaagcaaggtatttgatcattgctgtttttgttattgtttaaattgtggatatttttccttaatttaagattgttgtctaatatatgttcgaa |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
32569140 |
ttggtaaaaagcaaggtatttgatcattgctgtttttgttattgtttaaactgtagatatttttccttaatttaagattgttgtctaatatatgttcaaa |
32569239 |
T |
|
| Q |
606 |
attaaaggaacattataccttagcaaaccaaacacatgaagattgtacgaaacactcattattgaaccaaatttgataataagtga |
691 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32569240 |
attaaaggaacattgtacgttagc---tgaaacacacgaagattgtacgaaacactcattattgaatcaaatttgataataagtga |
32569322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 432
Target Start/End: Complemental strand, 32645760 - 32645334
Alignment:
| Q |
9 |
agcagagatatttagaattaagagagaagctaaagttcttgctacttaccttatacatccacatgccaaaatctttcatttcagtgaacaatattctcca |
108 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||| ||| ||| |||| || |||||||||||||||||| |||||||| |||||||| ||||| |
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|
| T |
32645760 |
agcagagatttggagaattaagtgagaagctaaagttcttgatacatacgttatgcacccacatgccaaaatctttaatttcagttaacaatatgctcca |
32645661 |
T |
|
| Q |
109 |
agctcttgactcattaaaatcactggaaatttccttgagtcaagccaaatttaagcaagctgt---tgattgtgaagaagaaagcattcctgcttgcttt |
205 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
32645660 |
agctcttgacttgttaaaatcaatggaaatttccttgagtcaagccaaatttaagcaaactgtagatgattttgaagaagaaagcattcctgcttgcttt |
32645561 |
T |
|
| Q |
206 |
ggaccatcaagtttggaaagaaatgattgccttcgcatactaagtttcctttccaactcaatttcgcttcctgattttaaagtgagacatcaagtggaaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
32645560 |
ggaccatcaagtttggaaagaaatgattgccttcgcatactaagtttcctttccaactcaatttcgcttcctgaatttaaagtgagacatcaagtggaaa |
32645461 |
T |
|
| Q |
306 |
agttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttttagttattga |
405 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |
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|
| T |
32645460 |
agttttgcttgtcagatgctagtctaattttgtgtactgtatcaagttctatcaaactttactcagaagagacgagtccagtgaaatttttagtgattga |
32645361 |
T |
|
| Q |
406 |
tgaagcagctatgctaaaagaatgtga |
432 |
Q |
| |
|
||||||||| ||| ||||||||||| |
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|
| T |
32645360 |
tgaagcagcacagctgaaagaatgtga |
32645334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 308 - 535
Target Start/End: Complemental strand, 32525432 - 32525205
Alignment:
| Q |
308 |
ttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttttagttattgatg |
407 |
Q |
| |
|
|||||||||||||||||| | ||||| || ||||||| |||||| ||| | ||||| ||| ||| ||| ||| || | |||||||||| || |||| |
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|
| T |
32525432 |
ttttgcttgtcaaatgcttgcctaatcttctgtactgcatcaagttctgttaaactatacacagccgaggtgagcccaattcaatttttagtaatcgatg |
32525333 |
T |
|
| Q |
408 |
aagcagctatgctaaaagaatgtgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcagcttcctgcatt |
507 |
Q |
| |
|
|||| || ||||||||||||||| ||||| |||||||| ||||| |||||||| | |||| ||||| || || |||||||| || ||||||||||| |
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| T |
32525332 |
aagcggcacagctaaaagaatgtgaatcaacgattccattacagctgtctggtctccgcaattgcatcctgatcggagatgagagacaacttcctgcatt |
32525233 |
T |
|
| Q |
508 |
ggtaaaaagcaaggtatttgatcattgc |
535 |
Q |
| |
|
||| |||||||||||| ||||||||||| |
|
|
| T |
32525232 |
ggtgaaaagcaaggtagttgatcattgc |
32525205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 302 - 523
Target Start/End: Complemental strand, 32614175 - 32613954
Alignment:
| Q |
302 |
gaaaagttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaactttactcagaagagaagagtccggtgaaatttttagtta |
401 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||| || || || ||||| ||||| ||| |||||| | | || |||||||||||||| | |
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|
| T |
32614175 |
gaaaagttttgcttgtctaatgcatgtctgattttgtgtacagtgtctagttctattaaactgtacacagaaggaatggctcacgtgaaatttttagtga |
32614076 |
T |
|
| Q |
402 |
ttgatgaagcagctatgctaaaagaatgtgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcagcttcc |
501 |
Q |
| |
|
||||||||||||| ||| ||||||||||| || | ||||| |||||||| || ||||| ||| | || || ||||||||||||| || ||||| |
|
|
| T |
32614075 |
ttgatgaagcagcacagctgaaagaatgtgaatccatgattccgttgcagctaccgggtcttcaacatggcattcttataggtgatgagaaacaacttcc |
32613976 |
T |
|
| Q |
502 |
tgcattggtaaaaagcaaggta |
523 |
Q |
| |
|
||||| || |||||||||||| |
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|
| T |
32613975 |
ggcattagtcaaaagcaaggta |
32613954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 534
Target Start/End: Complemental strand, 32531723 - 32531607
Alignment:
| Q |
418 |
gctaaaagaatgtgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatgagaggcagcttcctgcattggtaaaaagc |
517 |
Q |
| |
|
||||||||||||||| | | | |||||||| ||||| | |||||| | | || |||||||| || |||||||| || ||||||||||| ||||||||| |
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|
| T |
32531723 |
gctaaaagaatgtgaattagcaattccattacagctgcacggtctccgccgctgcatcctaattggagatgagagacaacttcctgcattagtaaaaagc |
32531624 |
T |
|
| Q |
518 |
aaggtatttgatcattg |
534 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
32531623 |
aaggtacttgaccattg |
32531607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 32531849 - 32531781
Alignment:
| Q |
295 |
tcaagtggaaaagttttgcttgtcaaatgctagtctaattttgtgtactgtatcaagctctatcaaact |
363 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||| ||||||| |||||||||||||| || ||||| |
|
|
| T |
32531849 |
tcaagtggaaaaattttgcttgtcgtatgcttgtctagttttgtgcactgtatcaagctcaattaaact |
32531781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 389 - 523
Target Start/End: Complemental strand, 28856365 - 28856231
Alignment:
| Q |
389 |
aaatttttagttattgatgaagcagctatgctaaaagaatgtgagtcaaccattccattgcagcttcctggtctctgtcattgtatcctaataggtgatg |
488 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||| ||||| || |||||| ||| | |||| |||||||||| |
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|
| T |
28856365 |
aaatttctagttattgatgaagcagctcagctaaaagaatgtgaatcagccattccattacagctgccaggtctccaccatgctgtcctcataggtgatg |
28856266 |
T |
|
| Q |
489 |
agaggcagcttcctgcattggtaaaaagcaaggta |
523 |
Q |
| |
|
|||| || ||||||||| |||| ||||||| |||| |
|
|
| T |
28856265 |
agagacaacttcctgcagtggtcaaaagcacggta |
28856231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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