View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3508_low_4 (Length: 457)
Name: NF3508_low_4
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 25 - 441
Target Start/End: Complemental strand, 33993955 - 33993541
Alignment:
| Q |
25 |
ataaatgactaactcggcatgaaaaatggtaataaaggattcatgatgcagttttgccaaacaaatagctttattcgaatcaagtttgcttctctaagca |
124 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993955 |
ataaatgactaactcgacatgaaaaatggtaataaaggattcatgatgcagttttgccaaacaaatagctttattcgaatcaagtttgcttctctaagca |
33993856 |
T |
|
| Q |
125 |
catgccaatcacttcacgtcatttatttcccacaataataaaagttccacaaacattgtcaagaacaagcaagnnnnnnnnnnnnnnntaatagtccaaa |
224 |
Q |
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| T |
33993855 |
catgccaatcacttcacgtcatttatttcccacaataataaaagttccacaaacattgtcaagaacaagcaagacacacacacaca--taatagtccaaa |
33993758 |
T |
|
| Q |
225 |
caaagtaacatttaaatgccttgttccatcatggctctgatcctcattggaagaccataaagctttataaacccaacagcatcagcatgattatatatct |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993757 |
caaagtaacatttaaatgccttgttccatcatggctctgatcctcattggaagaccataaagctttataaacccaacagcatcagcatgattatatatct |
33993658 |
T |
|
| Q |
325 |
ccccactctcaaatgaagaaatatcttccctatataaactataaggactcttccgacccgtcacagaagcactacctttatacagtttcaaactcactga |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993657 |
ccccactctcaaatgaagaaatatcttccctatataaactataaggactcttccgacccgtcacagaagcactacctttatacagtttcaaactcactga |
33993558 |
T |
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| Q |
425 |
acctgttgtagtctgtg |
441 |
Q |
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| T |
33993557 |
acctgttgtagtctgtg |
33993541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 367 - 434
Target Start/End: Complemental strand, 34000617 - 34000550
Alignment:
| Q |
367 |
aaggactcttccgacccgtcacagaagcactacctttatacagtttcaaactcactgaacctgttgta |
434 |
Q |
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| T |
34000617 |
aaggactcttccgacccgtcacagaagcactgcctttatacagtttcaaactcactgaacctgttgta |
34000550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 438
Target Start/End: Original strand, 18852217 - 18852424
Alignment:
| Q |
231 |
aacatttaaatgccttgttccatcatggctctgatcctcattggaagaccataaagctttataaacccaacagcatcagcatgattatatatctccccac |
330 |
Q |
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|||| |||||||||||| || | ||| || | || | ||||||||||||| |||||| ||||| ||| |||||||||| |||| |||||| || | | |
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| T |
18852217 |
aacacttaaatgccttgctcaagcattgcccggaccttcattggaagaccgtaaagccggataaaaccagcagcatcagcttgatcatatatatcactat |
18852316 |
T |
|
| Q |
331 |
tctcaaatgaagaaatatcttccctatataaactataaggactcttccgacccgtcacagaagcactacctttatacagtttcaaactcactgaacctgt |
430 |
Q |
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|||||||||| || ||||||| |||||| | ||| | || ||||||| ||| || |||| | || |||||| || | ||||||| |||| |||||||| |
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| T |
18852317 |
tctcaaatgatgagatatcttgcctatacaggctaaaggggctcttcctacctgttacagtaacagaacctttgtataatttcaaagtcacagaacctgt |
18852416 |
T |
|
| Q |
431 |
tgtagtct |
438 |
Q |
| |
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||| |||| |
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|
| T |
18852417 |
tgtggtct |
18852424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 42865369 - 42865474
Alignment:
| Q |
272 |
tggaagaccataaagctttataaacccaacagcatcagcatgattatatatctccccactctcaaatgaagaaatatcttccctatataaactataagga |
371 |
Q |
| |
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||||||||| |||||| ||||| ||| |||||||||| |||| ||||||||| | || ||||||||| || ||||||| |||||| | ||| ||||| |
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| T |
42865369 |
tggaagaccgtaaagccggataaaaccagcagcatcagcttgatcatatatctcactaccctcaaatgatgagatatcttgcctatacaggctaaaagga |
42865468 |
T |
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| Q |
372 |
ctcttc |
377 |
Q |
| |
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|||||| |
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|
| T |
42865469 |
ctcttc |
42865474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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