View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3508_low_5 (Length: 433)
Name: NF3508_low_5
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 417
Target Start/End: Original strand, 28405073 - 28405481
Alignment:
| Q |
9 |
aagaagtaagaatggtacgttaatggcggtgatcaatgagtcttttgacgatcaatctgttactaatcttgaaatgaaccgggttgtttccggtgaaggg |
108 |
Q |
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| T |
28405073 |
aagaagtaagaatggtacattaatggcggtgatcaatgagtcttttgacgatcaatctgttactaatcttgaaatgaaccgggttgtttccggtgaaggg |
28405172 |
T |
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| Q |
109 |
gttacttgtggggagggtagagatggaggggtggtttgttgggggcctaattcggagagtttgaaagtttcaaatgtttctgatagttttgctgttttgg |
208 |
Q |
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| T |
28405173 |
tttacttgtggtgaggttagagatggagggttggtttgttgggggcctaattcggagaatttgaaagtttcaaatgtttctgatagttttgctgttttgg |
28405272 |
T |
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| Q |
209 |
cagcagggaggaccgcggtatgcggtgttttgaatgtttctggtgatttgagatgttggggtgatatagaacctccgttgaaaacggaggttcgttttgt |
308 |
Q |
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| T |
28405273 |
cagcagggaggaccgctgtatgcggagttttgaatgcttccggtgatttgagatgttggggtgatattgaacctccgttgaaaacggaggttcgttttgt |
28405372 |
T |
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| Q |
309 |
ttccctttctggaggggcgcgccatttttgtggtgttcgagaggataatcatgtgattgaatgttggggtaatttgaattcatctttggttcctaaaggt |
408 |
Q |
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| T |
28405373 |
ttccctttctggaggggcgcgtcatttttgtggtgttcgagaggataatcatgtgattgaatgttggggtaatttgaattcatctttggttcctaaaggt |
28405472 |
T |
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| Q |
409 |
tatggcttt |
417 |
Q |
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| T |
28405473 |
tatggcttt |
28405481 |
T |
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