View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3508_low_8 (Length: 391)
Name: NF3508_low_8
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 3085316 - 3085692
Alignment:
| Q |
1 |
tccatttagatacaataacatatcattttctatgttacttaacatgattgcaaatgcacaagtaaatttattgcctaagcacacaaatacttcaatgtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3085316 |
tccatttagatacaataacatatcattttctatgttacttaacatgattgcaaatgcacaagtaaatttattgcctaagcacacaaatacttcaatgtct |
3085415 |
T |
|
| Q |
101 |
ttggaacaattttgtagagacactgtgatgacaatatggcattatcatggtggttgtcaagttggtagggttgttgataatgattataaggttcttggtg |
200 |
Q |
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| T |
3085416 |
ttggaacaattttgtagagacactgtgatgacaatatggcattatcatggtggttgtcaagttggtagggttgttgataatgattataaggttcttggtg |
3085515 |
T |
|
| Q |
201 |
tcgatgcattgcgcgtaatcgacggttctaccttcaactattctccgggaactaatcctcaagccactctcatgatgcttggaaggtaaaatatatagtt |
300 |
Q |
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| T |
3085516 |
tcgatgcattgcgcgtaatcgacggttctaccttcaactattctcctggaactaatcctcaagccactctcatgatgcttggaaggtaaaatatatagtt |
3085615 |
T |
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| Q |
301 |
agtctatgcatataaatttaatttgtgtgttacaatgtgtgtacattggtgaaattgttccttaatcttgtgatttc |
377 |
Q |
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| T |
3085616 |
agtctatgcatataaatttaatttgtgtgttacaatgtgtgtacattggtgaaattgttccttaatcttgtgatttc |
3085692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 3094162 - 3094538
Alignment:
| Q |
1 |
tccatttagatacaataacatatcattttctatgttacttaacatgattgcaaatgcacaagtaaatttattgcctaagcacacaaatacttcaatgtct |
100 |
Q |
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|||||||| ||||| ||||| ||| |||||||| |||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
3094162 |
tccatttaaatacacaaacatgtcagtttctatgctacttaacatgacagcaaattcaccagtaaatttattgcctaaacacacaaatacttcaatgtct |
3094261 |
T |
|
| Q |
101 |
ttggaacaattttgtagagacactgtgatgacaatatggcattatcatggtggttgtcaagttggtagggttgttgataatgattataaggttcttggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
3094262 |
ttggaacaattttgtagagacactgtgatgactatatggcattatcatggtggttgtcaagttggtagggttgttgatagtgattataaggttgctggtg |
3094361 |
T |
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| Q |
201 |
tcgatgcattgcgcgtaatcgacggttctaccttcaactattctccgggaactaatcctcaagccactctcatgatgcttggaaggtaaaatatatagtt |
300 |
Q |
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|| | ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||| |
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| T |
3094362 |
tccacgcattgcgcgtaatcgacggttctacctttaatcattctcctggaactaatcctcaagccactgttatgatgcttggaaggtaaaatatacagtt |
3094461 |
T |
|
| Q |
301 |
agtctatgcatataaatttaatttgtgtgttacaatgtgtgtacattggtgaaattgttccttaatcttgtgatttc |
377 |
Q |
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||| ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||| ||||| |||||||| |||| |
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| T |
3094462 |
agtatatgcatatgaatttcatttgtgtgtgacaatgtgtgtacattgttgaaattgctcctttatcttgtgttttc |
3094538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 45946919 - 45946989
Alignment:
| Q |
131 |
acaatatggcattatcatggtggttgtcaagttggtagggttgttgataatgattataaggttcttggtgt |
201 |
Q |
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||||| |||||||||||||| ||||||||| ||||| ||||||||| || |||||||||| ||||||| |
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| T |
45946919 |
acaatttggcattatcatggaggttgtcaatctggtaaagttgttgatcataattataaggtcattggtgt |
45946989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 42960094 - 42960045
Alignment:
| Q |
104 |
gaacaattttgtagagacactgtgatgacaatatggcattatcatggtgg |
153 |
Q |
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||||| |||||||||||||||||||| || || ||||| ||||||||||| |
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| T |
42960094 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
42960045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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