View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3508_low_9 (Length: 373)
Name: NF3508_low_9
Description: NF3508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3508_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 357
Target Start/End: Complemental strand, 16909843 - 16909490
Alignment:
| Q |
9 |
acatcatcattagtaggaaaaaataacattatcactacctcaattaaaacaaaatctaatttctaatggaatcctttggtgtcaaagttgaagaa---ac |
105 |
Q |
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| T |
16909843 |
acatcatcattagtaggaaaaaataacattatcactacctcaattaaaacaaaatctaatttctaatggaatcctttggtgtgaaagttgaagaagaaac |
16909744 |
T |
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| Q |
106 |
aatgttaaaagctgtttttcttccctttatatcaaaaa--gtcacctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgtta |
203 |
Q |
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| T |
16909743 |
aatgttaaaagctgtttttcttccctttatatcaaaaaaagtcacctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgtta |
16909644 |
T |
|
| Q |
204 |
ccataatcaccacaccagcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttcc |
303 |
Q |
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| T |
16909643 |
ccataatcaccacaccagcaaatgcagccatttttcaaacctccatcgaccacgattcaagtcgcggtcggtccattagaactcacattgtcaagtttcc |
16909544 |
T |
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| Q |
304 |
acaagtacctggtttggcacaaggaatggaaagcttcaacgccgacactcctaa |
357 |
Q |
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| T |
16909543 |
acaagtacctggtttgccacaaggaatggaaagtttcaatgctgacactcctaa |
16909490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 52 - 358
Target Start/End: Original strand, 14868870 - 14869179
Alignment:
| Q |
52 |
ttaaaacaaaatctaatttctaatggaatcctttggtgtcaaagttgaag---aaacaatgttaaaagctgtttttcttccctttatatcaaaaagtcac |
148 |
Q |
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| T |
14868870 |
ttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaagtcac |
14868969 |
T |
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| Q |
149 |
ctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgttaccataatcaccacaccagcaaatgcagccatttttcaaacctcaa |
248 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14868970 |
ctcatttttgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctcaa |
14869069 |
T |
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| Q |
249 |
tcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacaaggaatggaaagcttcaacgccga |
348 |
Q |
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| T |
14869070 |
tcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacgaggaatggaaagcttcaacgccga |
14869169 |
T |
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| Q |
349 |
cactcctaat |
358 |
Q |
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|||||||||| |
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| T |
14869170 |
cactcctaat |
14869179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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