View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3509_high_13 (Length: 207)
Name: NF3509_high_13
Description: NF3509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3509_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 45391685 - 45391856
Alignment:
| Q |
17 |
aatatagattcaaactcaagattactgtataagctggaagggggtcctaacatcccatacaagctctcttcgatagttagtttacatgcttaatgaaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45391685 |
aatatagattcaaactcaagattactgtataagctggaagggagtcctaacatcccatacaagctctcttcgatagttagtttacatgcttaatgaaatt |
45391784 |
T |
|
| Q |
117 |
aaatatattccttaatttctattacattgatcccaaacactatccatgttgtgataccaccaaattgaaaag |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45391785 |
aaatatattccttaatttctattacattgatcccaaacactatccatgttgtgataccaccaaattgaaaag |
45391856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 45376870 - 45377037
Alignment:
| Q |
17 |
aatatagattcaaactcaagattactgtataagctggaagggggtcctaacatcccatacaagctctcttcgatagttagtttacatgcttaatgaaatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||| ||||| |
|
|
| T |
45376870 |
aatatagattcaaactcaagattactgtataaggtggaagggagtcctaacatcccatacaagctcttttcga----tagtttgcatgcttaacaaaatt |
45376965 |
T |
|
| Q |
117 |
aaatatattccttaatttctattacattgatcccaaacactatccatgttgtgataccaccaaattgaaaag |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
45376966 |
aaatatattccttaatttctattacattgatcacaaacactattcattttgtgaacccaccaaattgaaaag |
45377037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University