View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3509_high_5 (Length: 294)
Name: NF3509_high_5
Description: NF3509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3509_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 10604580 - 10604859
Alignment:
| Q |
15 |
aaactaatataccgacaaaatgtaggattcgatatacccaagaatatagtgataattaaatggaggagaggaattgaagagccttactcaaggaaaccaa |
114 |
Q |
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| T |
10604580 |
aaactaataaacagacaaaatgtaggattcgatatacccaagaatatagtgataattaaatggaggagaggaattgaagagccttactcaaggaaaccaa |
10604679 |
T |
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| Q |
115 |
gaaccgctagcctcaaaaagatagggagtgtcatctttggcctaatttttctgtaaaagaagatgcaacaaaacataataagttgatgatcaataaacat |
214 |
Q |
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| T |
10604680 |
gaaccgctagcctcaaaaagatagggagtgtcatctttggcctaatttttctgtaaaagaagatgcaacaaaacagtataagttgatgatcaataaacat |
10604779 |
T |
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| Q |
215 |
taaattaaaatattatagctagcatagaaaaagaatgatagaaaaggtgtacttttgtttcatattttatagcatgatta |
294 |
Q |
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| T |
10604780 |
taaattaaaatattatagctagcatagaaaaagaatgatagaaaagatgtacttttgtttgatattttatagcatgatta |
10604859 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 32604288 - 32604369
Alignment:
| Q |
90 |
gaagagccttactcaaggaaaccaagaaccgctagcctcaaaaagatagggagtgtcatctttggcctaatttttctgtaaa |
171 |
Q |
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| T |
32604288 |
gaagagccttactcaaggaaaccaagtgccactatcctcaggaagatggggagagtcatctttggccttgtttttctgtaaa |
32604369 |
T |
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