View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3509_high_8 (Length: 251)

Name: NF3509_high_8
Description: NF3509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3509_high_8
NF3509_high_8
[»] chr3 (3 HSPs)
chr3 (105-241)||(43485259-43485395)
chr3 (110-158)||(33309986-33310033)
chr3 (110-182)||(54141377-54141448)
[»] chr4 (6 HSPs)
chr4 (111-177)||(5521525-5521590)
chr4 (112-160)||(38834067-38834114)
chr4 (110-182)||(51203221-51203292)
chr4 (112-158)||(11692153-11692198)
chr4 (177-215)||(38812246-38812284)
chr4 (177-218)||(20097474-20097515)
[»] chr5 (3 HSPs)
chr5 (111-160)||(26032249-26032297)
chr5 (110-158)||(38446007-38446054)
chr5 (110-182)||(40972136-40972207)
[»] chr2 (5 HSPs)
chr2 (177-218)||(22963424-22963465)
chr2 (177-218)||(22998012-22998053)
chr2 (110-158)||(17642640-17642687)
chr2 (110-158)||(35652128-35652175)
chr2 (110-158)||(35665327-35665374)
[»] chr8 (2 HSPs)
chr8 (110-158)||(23757617-23757665)
chr8 (109-182)||(22210250-22210322)
[»] chr7 (4 HSPs)
chr7 (106-182)||(2145921-2145996)
chr7 (177-215)||(3953755-3953793)
chr7 (109-157)||(25245011-25245058)
chr7 (110-158)||(30219067-30219114)
[»] chr6 (1 HSPs)
chr6 (177-226)||(19631773-19631818)
[»] chr1 (1 HSPs)
chr1 (185-226)||(34491484-34491525)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 43485259 - 43485395
Alignment:
Q  105 aaataggttaaataagtttttcttccctatataatatagcgaattttaattttaatatttcaaaaataaaatagaatgacttttctggtgaagttaattc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |    
T  43485259 aaataggttaaataagtttttcttccctatataatatagcgaattttaattttaatccttcaaaaataaaatagaatgacttttctggtgaagttaatcc 43485358  T
Q  205 tatgaccaatcattgaacattttcatatttaattcat 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  43485359 tatgaccaatcattgaacattttcatatttaattcat 43485395  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 33310033 - 33309986
Alignment:
Q  110 ggttaaataagtttttcttccctatataatatagcgaattttaatttta 158  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||||    
T  33310033 ggttaaataagtttttcttccctaaat-atatagcgaatttttatttta 33309986  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 54141377 - 54141448
Alignment:
Q  110 ggttaaataagtttttcttccctatataatatagcgaattttaattttaatatttcaaaaataaaatagaatg 182  Q
    ||||||||||||||||||||| || | ||||||||||||||| ||| || |  || ||||||||||| |||||    
T  54141377 ggttaaataagtttttcttccata-aaaatatagcgaattttgattgtagttcttaaaaaataaaattgaatg 54141448  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 5521590 - 5521525
Alignment:
Q  111 gttaaataagtttttcttccctatataatatagcgaattttaattttaatatttcaaaaataaaata 177  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||| |  || ||||||||||||    
T  5521590 gttaaataagtttttcgtccctata-aatatagcgaattttgattttagtccttaaaaaataaaata 5521525  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 38834114 - 38834067
Alignment:
Q  112 ttaaataagtttttcttccctatataatatagcgaattttaattttaat 160  Q
    |||||||||||||||||||||| | |||||| |||||||||||||||||    
T  38834114 ttaaataagtttttcttcccta-aaaatataacgaattttaattttaat 38834067  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 51203221 - 51203292
Alignment:
Q  110 ggttaaataagtttttcttccctatataatatagcgaattttaattttaatatttcaaaaataaaatagaatg 182  Q
    ||||||||||||||||| |||||||| ||||| ||||||||| |||||| |   | |||||||||||||||||    
T  51203221 ggttaaataagtttttcgtccctata-aatattgcgaattttgattttagtccctaaaaaataaaatagaatg 51203292  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 11692153 - 11692198
Alignment:
Q  112 ttaaataagtttttcttccctatataatatagcgaattttaatttta 158  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  11692153 ttaaataagtttttcatccctata-aatatagcgaattttgatttta 11692198  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 38812284 - 38812246
Alignment:
Q  177 agaatgacttttctggtgaagttaattctatgaccaatc 215  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  38812284 agaatgacttttctggtgaagttaatcctatgactaatc 38812246  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 20097515 - 20097474
Alignment:
Q  177 agaatgacttttctggtgaagttaattctatgaccaatcatt 218  Q
    |||||||||||||||||||||||||  |||||| ||||||||    
T  20097515 agaatgacttttctggtgaagttaaccctatgatcaatcatt 20097474  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 26032249 - 26032297
Alignment:
Q  111 gttaaataagtttttcttccctatataatatagcgaattttaattttaat 160  Q
    |||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  26032249 gttaaataagtttttcgtccctata-aatatagcgaattttgattttaat 26032297  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 38446054 - 38446007
Alignment:
Q  110 ggttaaataagtttttcttccctatataatatagcgaattttaatttta 158  Q
    ||||||||||||||||| |||||||| |||| |||||||||| ||||||    
T  38446054 ggttaaataagtttttcatccctata-aatacagcgaattttgatttta 38446007  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 40972207 - 40972136
Alignment:
Q  110 ggttaaataagtttttcttccctatataatatagcgaattttaattttaatatttcaaaaataaaatagaatg 182  Q
    |||||||||| |||||| |||||||| |||||| |||||||| |||||| |   | |||||||||||||||||    
T  40972207 ggttaaataattttttcatccctata-aatataacgaattttgattttagtccctaaaaaataaaatagaatg 40972136  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 22963424 - 22963465
Alignment:
Q  177 agaatgacttttctggtgaagttaattctatgaccaatcatt 218  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  22963424 agaatgacttttctggtaaagttaatcctatgaccaatcatt 22963465  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 22998053 - 22998012
Alignment:
Q  177 agaatgacttttctggtgaagttaattctatgaccaatcatt 218  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  22998053 agaatgacttttctggtaaagttaatcctatgaccaatcatt 22998012  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 17642687 - 17642640
Alignment:
Q  110 ggttaaataagtttttcttccctatataatatagcgaattttaatttta 158  Q
    ||||||||||||||||| |||||| | ||||||||||||||| ||||||    
T  17642687 ggttaaataagtttttcgtcccta-aaaatatagcgaattttgatttta 17642640  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 35652175 - 35652128
Alignment:
Q  110 ggttaaataagtttttcttccctatataatatagcgaattttaatttta 158  Q
    ||||||||||||||||| |||||||| |||||| | |||||||||||||    
T  35652175 ggttaaataagtttttcatccctata-aatatatcaaattttaatttta 35652128  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 35665327 - 35665374
Alignment:
Q  110 ggttaaataagtttttcttccctatataatatagcgaattttaatttta 158  Q
    ||||||||||||||||| ||| |||| ||||||||||||||| ||||||    
T  35665327 ggttaaataagtttttcgtccttata-aatatagcgaattttgatttta 35665374  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 23757665 - 23757617
Alignment:
Q  110 ggttaaataagtttttcttccctatataatatagcgaattttaatttta 158  Q
    ||||||||||||||||| |||||||| ||||||| ||||||| ||||||    
T  23757665 ggttaaataagtttttcgtccctataaaatatagtgaattttgatttta 23757617  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 22210322 - 22210250
Alignment:
Q  109 aggttaaataagtttttcttccctatataatatagcgaattttaattttaatatttcaaaaataaaatagaatg 182  Q
    |||||||||||||||||| ||| |||| |||||| |||||||| |||||| |  || | |||||||||||||||    
T  22210322 aggttaaataagtttttcatccttata-aatataacgaattttgattttattccttaacaaataaaatagaatg 22210250  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 2145921 - 2145996
Alignment:
Q  106 aataggttaaataagtttttcttccctatataatatagcgaattttaattttaatatttcaaaaataaaatagaatg 182  Q
    ||||||||||||||||||||| ||  |||| ||||||||||||||| ||||||||  || |||||| |||| |||||    
T  2145921 aataggttaaataagtttttcgtctttata-aatatagcgaatttttattttaatccttaaaaaattaaattgaatg 2145996  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 3953755 - 3953793
Alignment:
Q  177 agaatgacttttctggtgaagttaattctatgaccaatc 215  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  3953755 agaatgacttttctggtgaagttaatcctatgactaatc 3953793  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 25245011 - 25245058
Alignment:
Q  109 aggttaaataagtttttcttccctatataatatagcgaattttaatttt 157  Q
    |||||||||||||||||| |||||||| || |||||||||||| |||||    
T  25245011 aggttaaataagtttttcatccctata-aaaatagcgaattttgatttt 25245058  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 30219114 - 30219067
Alignment:
Q  110 ggttaaataagtttttcttccctatataatatagcgaattttaatttta 158  Q
    ||||||||||||||||| ||| |||| ||||||||||||||| ||||||    
T  30219114 ggttaaataagtttttcgtccttata-aatatagcgaattttgatttta 30219067  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 19631773 - 19631818
Alignment:
Q  177 agaatgacttttctggtgaagttaattctatgaccaatcattgaacattt 226  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||    
T  19631773 agaatgacttttctggtgaagttaa----atgaccaatcattgaacattt 19631818  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 34491525 - 34491484
Alignment:
Q  185 ttttctggtgaagttaattctatgaccaatcattgaacattt 226  Q
    ||||||| ||||||||||||||||| |||||||| |||||||    
T  34491525 ttttctgatgaagttaattctatgatcaatcattaaacattt 34491484  T

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