View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3509_low_10 (Length: 245)
Name: NF3509_low_10
Description: NF3509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3509_low_10 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 47980440 - 47980213
Alignment:
| Q |
18 |
agaagaatattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaagga |
117 |
Q |
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| T |
47980440 |
agaagaatgttgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaagga |
47980341 |
T |
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| Q |
118 |
cactgaggagcagcagttaagtaaaccttctttccctttttgctataacctgaaaggtactttgcaagatcatcccaatgtaggtttgttcctccttcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47980340 |
cactgaggagcagcagttaagtaaaccttctttccctttttgctataacctgaaaggtactttgcaagatcatcccaatgtaggtttgttcctccttcaa |
47980241 |
T |
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| Q |
218 |
tgtcaaaatcaatgccatccaaaacagc |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
47980240 |
tgtcaaaatcaatgccatccaaaacagc |
47980213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 48222343 - 48222384
Alignment:
| Q |
39 |
attgttgtaaaattgcacccaaacatagtcaaaaagacctgt |
80 |
Q |
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| T |
48222343 |
attgttgtaaaattgaacccaaacatagtcaaatagtcctgt |
48222384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 24367486 - 24367610
Alignment:
| Q |
25 |
tattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaaggacactgag |
124 |
Q |
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| T |
24367486 |
tattgacaaggagggttgttgtagaattgtacccaaacataatcaaaaagtcctgttgtaagtgcatttcctatccaagcatcaggaaatggacattgag |
24367585 |
T |
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| Q |
125 |
gagcagcagttaagtaaaccttctt |
149 |
Q |
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| T |
24367586 |
gagctgcagttatgtaaactttctt |
24367610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 24367623 - 24367697
Alignment:
| Q |
171 |
aaggtactttgcaagatcatcccaatgtaggtttgttcctccttcaatgtcaaaatcaatgccatccaaaacagc |
245 |
Q |
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| T |
24367623 |
aaggtacctagcaagatcaccccaatgttggcttgatcctccttcgatatcaaagtcaatgccatcaagaacagc |
24367697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 24455103 - 24455221
Alignment:
| Q |
25 |
tattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaaggacactgag |
124 |
Q |
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| T |
24455103 |
tattgacaagaagggttattgtagaattgtacccaaacaaaatcaaaaagtcccgttgtaagtgcatttcccaaccaagcatcaggaaatggacactgag |
24455202 |
T |
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| Q |
125 |
gagcagcagttaagtaaac |
143 |
Q |
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| T |
24455203 |
gagctgcagttatgtaaac |
24455221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 148913 - 148726
Alignment:
| Q |
25 |
tattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaaggacactgag |
124 |
Q |
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||||||||||| || || ||||| || || ||||||||||| ||||| || ||||| |||| || | ||| | | |||||||||||| |||||||||| |
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| T |
148913 |
tattgacaaggagggttattgtagaactgtacccaaacataatcaaagaggcctgttgtaagtgcatttcctatccaagcatcaggaaatggacactgag |
148814 |
T |
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| Q |
125 |
gagcagcagttaagtaaaccttctttccctttttgctataacctgaaaggtactttgcaagatcatcccaatgtaggtttgttcctccttcaat |
218 |
Q |
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| T |
148813 |
gagctgcagttatgtaaactttcttccc------gttataccctttaaggtacttggcaagatcaccccaatgttggtttgaccctccttcaat |
148726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 44838331 - 44838275
Alignment:
| Q |
24 |
atattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgt |
80 |
Q |
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|||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||| |
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| T |
44838331 |
atattgacaaggaggattattgtaaaattgtacccaaacaaagtcaaaaagacctgt |
44838275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 19135978 - 19136069
Alignment:
| Q |
154 |
tttttgctataacctgaaaggtactttgcaagatcatcccaatgtaggtttgttcctccttcaatgtcaaaatcaatgccatccaaaacagc |
245 |
Q |
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| T |
19135978 |
tttttgctgtatcctttaaggtacctagcaagatcatcccaataaaggtttgttcctccttcgatgtcgaaatcgatgccatcgagaacagc |
19136069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 19135858 - 19135961
Alignment:
| Q |
25 |
tattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaagcatagcatcaggaaaaggacactgag |
124 |
Q |
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||||||||||| || || ||||| ||||| ||||||||| | || ||||||||||| || ||||| | ||| | | ||||||||||||||| || |||| |
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| T |
19135858 |
tattgacaaggagggttattgtagaattgaacccaaacacaatcgaaaagacctgtttttagggcttttcctatccaagcatcaggaaaagggcattgag |
19135957 |
T |
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| Q |
125 |
gagc |
128 |
Q |
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|||| |
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| T |
19135958 |
gagc |
19135961 |
T |
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