View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3509_low_4 (Length: 369)
Name: NF3509_low_4
Description: NF3509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3509_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 52700143 - 52699817
Alignment:
| Q |
18 |
ctttcattaagatccttccttcttaaccaccctttatcttgtcctccggtcgcagcggtaacagtcttcaccaaagcactactcaaccaacttccgattc |
117 |
Q |
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| T |
52700143 |
ctttcattaagatccttccttcttaaccaccctttatcttgtcctccggtcgtagcggtaacagtcttcaccaaagcactactcaaccaacttccgattc |
52700044 |
T |
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| Q |
118 |
caacctcagacaaaaacactgcactactaatactttttgtcccgtccgtcgcctcatcatagaaaaactccaactgtcccacataggtaaaaacttcagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52700043 |
caacctcagacaaaaacactgcactactaatactttttgtcccgtccgtcgcctcatcatagaaaaactccaactgtcccacataggtaaaaacttcagc |
52699944 |
T |
|
| Q |
218 |
actacccattagaaagaattgaggtaacaaccaaaacacactcatgctgttctctcctgggtagtgttcccgtctcgtcttttcaaccaatgctgctgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699943 |
actacccattagaaagaattgaggtaacaaccaaaacacactcatgctgttctctcctgggtagtgttcccgtctcgtcttttcaaccaatgctgctgaa |
52699844 |
T |
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| Q |
318 |
gccatagcgatgattgagacaaaaagt |
344 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
52699843 |
gccatagcgatgattgagacaaaaagt |
52699817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 39 - 336
Target Start/End: Complemental strand, 52714399 - 52714102
Alignment:
| Q |
39 |
cttaaccaccctttatcttgtcctccggtcgcagcggtaacagtcttcaccaaagcactactcaaccaacttccgattccaacctcagacaaaaacactg |
138 |
Q |
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|||| ||||||||| ||||||||||| || ||| | || | |||||||||||||| |||| ||||||||||| ||||||| || ||||||||||| || |
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| T |
52714399 |
cttagccaccctttctcttgtcctccagttgcatctacaataatcttcaccaaagcagtacttaaccaacttccaattccaatcttagacaaaaacattg |
52714300 |
T |
|
| Q |
139 |
cactactaatactttttgtcccgtccgtcgcctcatcatagaaaaactccaactgtcccacataggtaaaaacttcagcactacccattagaaagaattg |
238 |
Q |
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|||||||||||||||||||||| ||||| |||||||| || ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
52714299 |
cactactaatactttttgtcccatccgttgcctcatcgtaaaaaaattctaactgtcccacataggtaaaaacttcagcagtaccaattagaaagaattg |
52714200 |
T |
|
| Q |
239 |
aggtaacaaccaaaacacactcatgctgttctctcctgggtagtgttcccgtctcgtcttttcaaccaatgctgctgaagccatagcgatgattgaga |
336 |
Q |
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||||||||||||||||||||||||||| || | |||| ||| || |||||| | |||||||| ||||| ||||||||||||||||||||||||| |
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| T |
52714199 |
aggtaacaaccaaaacacactcatgctatttggttgcgggtggtgatcgcgtctccttttttcaactaatgcagctgaagccatagcgatgattgaga |
52714102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 39 - 343
Target Start/End: Complemental strand, 52723421 - 52723117
Alignment:
| Q |
39 |
cttaaccaccctttatcttgtcctccggtcgcagcggtaacagtcttcaccaaagcactactcaaccaacttccgattccaacctcagacaaaaacactg |
138 |
Q |
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|||| ||||||||| ||||||||||| || ||| | || | |||||||||||||| |||| ||||||||||| ||||||| | ||||||||||| || |
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| T |
52723421 |
cttagccaccctttctcttgtcctccagttgcatctacaataatcttcaccaaagcagtacttaaccaacttccaattccaatcagagacaaaaacattg |
52723322 |
T |
|
| Q |
139 |
cactactaatactttttgtcccgtccgtcgcctcatcatagaaaaactccaactgtcccacataggtaaaaacttcagcactacccattagaaagaattg |
238 |
Q |
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|||||||||||||||||||||| || || |||||||| || ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
52723321 |
cactactaatactttttgtcccatctgttgcctcatcgtaaaaaaattctaactgtcccacataggtaaaaacttcagcagtaccaattagaaagaattg |
52723222 |
T |
|
| Q |
239 |
aggtaacaaccaaaacacactcatgctgttctctcctgggtagtgttcccgtctcgtcttttcaaccaatgctgctgaagccatagcgatgattgagaca |
338 |
Q |
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||||||||||||||||||||||||||| || | |||||||| || |||||| | |||||||| ||||| ||||||||||||||||||||||||| | |
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| T |
52723221 |
aggtaacaaccaaaacacactcatgctatttggttgcgggtagtgatcgcgtctccttttttcaactaatgcagctgaagccatagcgatgattgagata |
52723122 |
T |
|
| Q |
339 |
aaaag |
343 |
Q |
| |
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||||| |
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|
| T |
52723121 |
aaaag |
52723117 |
T |
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