View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3509_low_9 (Length: 249)
Name: NF3509_low_9
Description: NF3509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3509_low_9 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0003 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 304754 - 304565
Alignment:
| Q |
1 |
atgtttttggaaatgttgcaaaaatatgaacagtcctttatcatctacttttgcaaccactaccaccaagttgactcactgtannnnnnnataacctgag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
304754 |
atgtttttggaaatgttgcaaaaacatgaacagtcctttatcatctactcttgcaaccacaaccaccgagttgactcactgtattttttaataacctgag |
304655 |
T |
|
| Q |
101 |
ttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctacttactttgtccaaactttcaaaattaac |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
304654 |
ttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctacttactttgtccaaactttcaaaattaac |
304565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 304543 - 304506
Alignment:
| Q |
206 |
cagattcaaactaatctccttcaatctcgttcatctct |
243 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
304543 |
cagatccaaactaatctccttcaatctcgttcttctct |
304506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 20072102 - 20071847
Alignment:
| Q |
1 |
atgtttttggaaatgttgcaaaaatatgaacagtcctttatcatctacttttgcaaccactaccaccaagttgactcactgtannnnnnnataacctgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||||||| || |||||||||| |
|
|
| T |
20072102 |
atgtttttggaaatgttgcaaaaatatgaacagtcctttatcatctactcttgcgaccacaaccaccgagttgactcactatattttttaataacctgag |
20072003 |
T |
|
| Q |
101 |
ttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctacttactttgtccaaactttcaaaat-------------t |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
20072002 |
ttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctacttattttgtccaaactttcaaaattaacaaccaaaatt |
20071903 |
T |
|
| Q |
188 |
aacctcaccattaccctccagattcaaactaatctccttcaatctcgttcatctct |
243 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
20071902 |
aaccttaccattaccctccagatccaaactaatatccttcaatctcgttcttctct |
20071847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 33073379 - 33073479
Alignment:
| Q |
97 |
tgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctac---------ttactttgtccaaactttcaaaatt |
187 |
Q |
| |
|
||||||||||||||||| || | ||||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33073379 |
tgagttgactcaaattagca--accaaaatcatctctttcctttctcagagatattgaatctctaccccttcatgttactttgtccaaactttcaaaatt |
33073476 |
T |
|
| Q |
188 |
aac |
190 |
Q |
| |
|
||| |
|
|
| T |
33073477 |
aac |
33073479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 36984764 - 36984664
Alignment:
| Q |
97 |
tgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctac---------ttactttgtccaaactttcaaaatt |
187 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36984764 |
tgagttgactcaaattagca--atcaaaatcatctttttcctttctcggagatattgaatctctaccccttcatgttactttgtccaaactttcaaaatt |
36984667 |
T |
|
| Q |
188 |
aac |
190 |
Q |
| |
|
||| |
|
|
| T |
36984666 |
aac |
36984664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 37010203 - 37010103
Alignment:
| Q |
97 |
tgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctac---------ttactttgtccaaactttcaaaatt |
187 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37010203 |
tgagttgactcaaattagca--atcaaaatcatctttttcctttctcggagatattgaatctctaccccttcatgttactttgtccaaactttcaaaatt |
37010106 |
T |
|
| Q |
188 |
aac |
190 |
Q |
| |
|
||| |
|
|
| T |
37010105 |
aac |
37010103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University