View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3510_high_1 (Length: 667)
Name: NF3510_high_1
Description: NF3510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3510_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 18 - 662
Target Start/End: Complemental strand, 42603568 - 42602924
Alignment:
| Q |
18 |
ttcacttcctttctctttgaattgttctggagatgaggaaagggtttgttttgctcctgctgaagtgatttctacacctttgcctttgtctaacaatcct |
117 |
Q |
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| T |
42603568 |
ttcacttcctttctctttgaattgttctggagatgaggaaagggtttgttttgctcctgctgaagtgatttctgcacctttgcctttgtctaacaatcct |
42603469 |
T |
|
| Q |
118 |
tggcttgaatctgctgtaacaaagatcaccaatttcggtgagggtagccaccaacatcaacaccatcatcatgtcaatgaaggttcagtctctaatggtt |
217 |
Q |
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| T |
42603468 |
tggcttgaatctgctgtaacaaagatcaccaatttcggtgagggtagccaccaacatcaacaccatcatcatgtcaatgaaggttcagtctctaatggtt |
42603369 |
T |
|
| Q |
218 |
catcggagagtcagagtttgagcttgaggttgaatgagaatgcatcagaacatgaagagggtaatggttcagggaatccttatcagcatgaaggtactga |
317 |
Q |
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| T |
42603368 |
catcggagagtcagagtttgagcttgaggttgaatgagaatgcatcagaacatgaagagggtaatggttcagggaatccttatcagcatgaaggtactga |
42603269 |
T |
|
| Q |
318 |
agtcgagacaggagaagaggacgaagaagaggagcatcgtggttttgagcttttgagcttgcttactggttgtgtcgatgccattgggtcaaggaatgtg |
417 |
Q |
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| T |
42603268 |
agtggagacaggagaagaggacgaagaagaggagcatcgtggttttgagcttttgagcttgcttactggttgtgtcgatgccattgggtcaaggaatgtg |
42603169 |
T |
|
| Q |
418 |
gctgcagtcaaccatttcattgcaaaattgggtgatcttgcatctccaagaggaacttcgataagccgaatttgtgcttattttacagaagccttagcca |
517 |
Q |
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| T |
42603168 |
gctgcagtcaaccatttcattgcaaaattgggtgatcttgcatctccaagaggaacttcgataagccgaatttgtgcttattttacagaagccttagcca |
42603069 |
T |
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| Q |
518 |
tcagagtcactaggctttggcctcatgtttttcaaatcagtgccacttctcgcgattttgacagggtggtggatgatgatgaaactgtcactgcattgag |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42603068 |
tcagagtcactaggctttggcctcatgtttttcaaatcagtgccacttctcgcgattttgacagggtggtggatgatgatgaaactgtcactgcattgag |
42602969 |
T |
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| Q |
618 |
gcttctaaaccaggttaccccaattcccaagtttcttcatttcac |
662 |
Q |
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| T |
42602968 |
gcttctaaaccaggttaccccaattcccaagtttcttcatttcac |
42602924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 570 - 662
Target Start/End: Complemental strand, 37498502 - 37498410
Alignment:
| Q |
570 |
cgattttgacagggtggtggatgatgatgaaactgtcactgcattgaggcttctaaaccaggttaccccaattcccaagtttcttcatttcac |
662 |
Q |
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||||||||||| ||| ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
37498502 |
cgattttgacaaggttgtggacgatgatgaaattgtcactgcattgaggcttttaaaccaggttaccccaatttccaagtttcttcatttcac |
37498410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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