View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3510_high_2 (Length: 304)
Name: NF3510_high_2
Description: NF3510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3510_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 17781641 - 17781911
Alignment:
| Q |
15 |
cagagacataaggttagtataagacgatccgttctccatcaaagcaactctacacttttctctcatatcttttaccttcctcctaatctcatcactaccg |
114 |
Q |
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| T |
17781641 |
cagagacataaggttagtataagacgatccgttctccatcaaagcaactctacacttttctctcatatcttttaccttcctcctaatctcatcactaagg |
17781740 |
T |
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| Q |
115 |
ttcatcaatgtacgaacaccattttcaacttcttctgcctgtaccaaatctccacccactcgataatccaacctaatctccactgctaatcccaattctc |
214 |
Q |
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| T |
17781741 |
ttcatcaatgtacgaacaccattttcaacttcttctgcctgtaccaaatctccacccacacgataatccaacctaatctccactgctaatcccaattctc |
17781840 |
T |
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| Q |
215 |
taaccatttgaaatgcattcatttgttgctctgcatacaccggccacgtagcaattggcgcaccataccac |
285 |
Q |
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| T |
17781841 |
taaccatttgaaacgcgttcatttgttgctctgcatacaccggccacgtagcaattggcacaccataccac |
17781911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 20581986 - 20582256
Alignment:
| Q |
15 |
cagagacataaggttagtataagacgatccgttctccatcaaagcaactctacacttttctctcatatcttttaccttcctcctaatctcatcactaccg |
114 |
Q |
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| T |
20581986 |
cagagacataaggttggtataagatgatccattctccatcaaactaaccttacacttttcactcatttcttttaccttcctcctaatctcatcactattg |
20582085 |
T |
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| Q |
115 |
ttcatcaatgtacgaacaccattttcaacttcttctgcctgtaccaaatctccacccactcgataatccaacctaatctccactgctaatcccaattctc |
214 |
Q |
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| T |
20582086 |
ttcatcaaggtactaacaccattcttaacttcttctgccaacaccagatccccacccaccctataatccagcctaatctccactgctaatcccaattccc |
20582185 |
T |
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| Q |
215 |
taaccatttgaaatgcattcatttgttgctctgcatacaccggccacgtagcaattggcgcaccataccac |
285 |
Q |
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| T |
20582186 |
taaccatctggaatgcattcatttgttgctctgcatagaccggccacgtggcaattggcacaccaaaccac |
20582256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 28 - 285
Target Start/End: Original strand, 20562836 - 20563093
Alignment:
| Q |
28 |
ttagtataagacgatccgttctccatcaaagcaactctacacttttctctcatatcttttaccttcctcctaatctcatcactaccgttcatcaatgtac |
127 |
Q |
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| T |
20562836 |
ttagtataagatgatccattatccatcaaagcaaatctacacttttcactcatttctttaaccttcctcctaatctcatgactattgttcatcaaggtag |
20562935 |
T |
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| Q |
128 |
gaacaccattttcaacttcttctgcctgtaccaaatctccacccactcgataatccaacctaatctccactgctaatcccaattctctaaccatttgaaa |
227 |
Q |
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| T |
20562936 |
ttacaccattcttgacttcttctgcctgcaccaaatccccacccaccctataatccaacctaatctccacggctagtcccgattccctaaccatctcgaa |
20563035 |
T |
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| Q |
228 |
tgcattcatttgttgctctgcatacaccggccacgtagcaattggcgcaccataccac |
285 |
Q |
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|||||||||||||||||| ||||| || |||||||| ||||||||| ||||||||||| |
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| T |
20563036 |
tgcattcatttgttgctccgcataaactggccacgtggcaattggcacaccataccac |
20563093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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