View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3510_high_3 (Length: 302)
Name: NF3510_high_3
Description: NF3510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3510_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 8647862 - 8647590
Alignment:
| Q |
12 |
ccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagaggcaatccctgaggtagtgtaaag |
111 |
Q |
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| T |
8647862 |
ccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcagaaagaggcaatccctgaggtagtgtaaag |
8647763 |
T |
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| Q |
112 |
taaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtgaatcatgactag |
211 |
Q |
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| T |
8647762 |
taaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtgaatcatgactag |
8647663 |
T |
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| Q |
212 |
cggtccaaaatagaagcttgatcttctccagggctttcatagttggaaactgcttacgaagaaaagtcaatat |
284 |
Q |
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| T |
8647662 |
cggtccaaaatagaagcttgatcttctccagggctttcatagttggaaactgcttacgaagaaaagtcaatat |
8647590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 19722166 - 19721920
Alignment:
| Q |
2 |
cttttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagagg-caatccctgag |
100 |
Q |
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||||| ||||||| |||||| |||| |||||||||||||| | |||| | |||||||||||||||||||||||||||||| ||||||| ||||||| ||| |
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| T |
19722166 |
cttttctgagccacgagtgagtgtttaactcctggaagaaagaaatatcgttgtaccccaaggatctccaaatacaagcagaaagagggcaatcccggag |
19722067 |
T |
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| Q |
101 |
gtagtgtaaagtaaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtga |
200 |
Q |
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| T |
19722066 |
gcactgtaaa----acatcttccacatgatcattacatctataacacataggagacaaaaccataccgcgacggtgcaaaagcgctttagtggggagtga |
19721971 |
T |
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| Q |
201 |
atcatgactagcggtccaaaatagaagcttgatcttctccagggctttcat |
251 |
Q |
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| T |
19721970 |
aacatggctagcggtccaaaaaaggaacttgatcttctctggggctttcat |
19721920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 4491224 - 4491308
Alignment:
| Q |
5 |
ttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagagg |
89 |
Q |
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| T |
4491224 |
ttttgagccacgagtgagtgtttaaatcctagaataacacaatagcattgtaccccaaggatcttcacatacaatcataaagagg |
4491308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 29312684 - 29312451
Alignment:
| Q |
3 |
ttttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagaggcaa-tccctgagg |
101 |
Q |
| |
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|||||||||||| |||||| |||| ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| || ||||||||| |
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| T |
29312684 |
ttttttgagccacgagtgagtgtttaactcatggaagaacgcaataccattgttccc-aaggatctccaaatacaagcagaaagagggaaatccctgagg |
29312586 |
T |
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| Q |
102 |
tagtgtaaagtaaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtgaa |
201 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||| ||| |
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| T |
29312585 |
cagtctaaa----acatcttccacatgatcattacatctataacacataggagacaaaaccataccgcgacggtgcaaaagcactttagtggggagcgaa |
29312490 |
T |
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| Q |
202 |
tcatgactagcggtccaaaatagaagcttgatcttctcc |
240 |
Q |
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| T |
29312489 |
tcatgactagtggtccaaaagaacaacttgatcttctcc |
29312451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 12288498 - 12288726
Alignment:
| Q |
8 |
tgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagagg-caatccctgaggtagtg |
106 |
Q |
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||||||| |||||| |||| |||||||||||||| | |||| |||| |||||||| |||||||||||||||||| ||| ||| ||||||| |||| |||| |
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| T |
12288498 |
tgagccacgagtgagtgtttaactcctggaagaaagaaatatcattttaccccaatgatctccaaatacaagcagaaatagggcaatcccggaggcagtg |
12288597 |
T |
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| Q |
107 |
taaagtaaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagt-ggggagtgaatcat |
205 |
Q |
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|||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
12288598 |
taaa----acatcttccacatgatcattacatctatagcacacaggagacaaaaccataccgcgatggtgcaaaagcgctttagtgggggagtgaatcat |
12288693 |
T |
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| Q |
206 |
gactagcggtccaaaatagaagcttgatcttct |
238 |
Q |
| |
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||||| |||||||||| || | ||||||||||| |
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| T |
12288694 |
gactaacggtccaaaaaagcaacttgatcttct |
12288726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 3632427 - 3632618
Alignment:
| Q |
2 |
cttttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaaga-ggcaatccctgag |
100 |
Q |
| |
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||||||||||||| |||||| ||| |||||||||||||| ||| | | |||||||||||| |||||||||||||||||| | ||| | |||||||| || |
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| T |
3632427 |
cttttttgagccacgagtgagtgtgtaactcctggaagaa-gcagtgctattgtaccccaaagatctccaaatacaagcagagagatgacaatccctaag |
3632525 |
T |
|
| Q |
101 |
gtagtgtaaagtaaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggag |
197 |
Q |
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|||| | |||||| ||| ||||||||||||||||||| |||| |||| ||||| | ||| |||||||||| |||| || ||||||||||| |
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| T |
3632526 |
acagtgca----aaacattttcaacatgatcattacatctatggcacaaaggatacaaagccatatcgcgatggtgtaaaaatgctttagtggggag |
3632618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 2976785 - 2976740
Alignment:
| Q |
2 |
cttttttgagccatgagtgaatgttcaactcctggaagaacgcaat |
47 |
Q |
| |
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||||||||||||| |||||| |||| | |||||||||||||||||| |
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| T |
2976785 |
cttttttgagccacgagtgagtgtttagctcctggaagaacgcaat |
2976740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 4870713 - 4870802
Alignment:
| Q |
51 |
attgtaccccaaggatctccaaatacaagcataaaga-ggcaatccctgaggtagtgtaaagtaaacatcttccacatgatcattacatctata |
143 |
Q |
| |
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||||||||||||||||||||| ||||| ||| | ||| || ||||| |||| |||||| |||||||||| ||||| |||||||||||||| |
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| T |
4870713 |
attgtaccccaaggatctccacatacatgcagagagagggaaatcctcgaggcagtgta----aaacatcttcaacatggtcattacatctata |
4870802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 37035989 - 37035912
Alignment:
| Q |
5 |
ttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcat |
82 |
Q |
| |
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||||||||||| ||||| ||| ||||| |||||||| ||| ||| |||||||| |||||||||||| ||||| |||| |
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| T |
37035989 |
ttttgagccataagtgagtgtgtaactcatggaagaaagcagtactattgtaccacaaggatctccacatacatgcat |
37035912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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